Transcription Factor

Accessions: Q9GRA5 (JASPAR 2024)
Names: Q9GRA5_HALRO
Organisms: Halocynthia roretzi, sea squirt
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q9GRA5
Length: 556
Pfam Domains: 272-297 Zinc-finger double domain
285-309 Zinc finger, C2H2 type
285-309 C2H2-type zinc finger
301-328 Zinc-finger double domain
315-339 C2H2-type zinc finger
345-369 C2H2-type zinc finger
345-369 Zinc finger, C2H2 type
Sequence:
(in bold interface residues)
1 MKESENFNFSRPIDKAVHDSTYVTTHPVSYAYDNFYNPHDAAGAPVANNRQMLYHPSNSY 60
61 PSDTAGTKAHGLQVTNFYQSPYEICCNDPCKVAPHATFQSGRAISSEGFVQASSEDSYQD 120
121 NGYVSAQFDSNGKPISSNSNISMGYHQAPTALNFHSFHSFPPNKFYSPPQSMNDFYTFIR 180
181 PQQIHQQLGMCQSDYVCKWMYPANKQQLGKSTVPNEAPEVTEEPCNRVFVTLLDLVTHIS 240
241 LNHIGGSEQIDHTCYWQNCSRGKKSFKAKYKLVNHTRVHTGERPFSCPFPGCGKMFARSE 300
301 NLKIHKRIHTGERPFTCTFPGCDRRFANSSDRKKHSHVHTSDKPYTCKIKGCDKNYTHPS 360
361 SLRKHMRLHEAQGDVIHHQIDAECEKIDASNIPSSDSNNNIKRFCHSVSPGNLNTNSNIT 420
421 HIATSSMTSAPVSLTNFNSNLNQKSPKENMLYRPDGGDQNSYEIGKTAVTKMYTEPGVRA 480
481 GNGLFTEVLNTPLHAYSANDWYIYQTQRLGGMPTPPSEDRSQSNIATLCYKTSMRTEEIR 540
541 NTTLPYYYSDPYAVNE
Interface Residues: 180, 182, 183, 206, 231, 233, 234, 237, 241, 266, 267, 268, 269, 270, 271, 273, 274, 276, 277, 280, 285, 297, 298, 299, 300, 301, 304, 305, 306, 308, 309, 310, 313, 327, 328, 329, 330, 331, 332, 333, 334, 335, 338, 357, 358, 359, 360, 361, 363, 364, 367, 414, 416, 417, 420, 443
3D-footprint Homologues: 5v3j_F, 6wmi_A, 8ssq_A, 8ssu_A, 5kkq_D, 5yel_A, 6jnm_A, 7w1m_H, 7n5w_A, 1ubd_C, 5ei9_F, 2gli_A, 5k5i_A, 6ml4_A, 1tf6_A, 7eyi_G, 8h9h_G, 6e94_A, 7ysf_A, 2lt7_A, 2i13_A, 8gn3_A, 5und_A, 2jpa_A, 2kmk_A, 3uk3_C, 8cuc_F, 1tf3_A, 7y3l_A, 5kl3_A, 1mey_C, 1f2i_J, 1g2f_F, 6blw_A, 2v6e_B, 6u9q_A, 4x9j_A, 1llm_D, 7txc_E, 4m9v_C, 7y3m_I, 6a57_A, 2wbs_A, 5yj3_D
Binding Motifs: MA0118.1 ygGGkGkym
MA0118.2 gGGkG
Binding Sites: MA0118.1.1
MA0118.1.10
MA0118.1.11
MA0118.1.12
MA0118.1.13
MA0118.1.14
MA0118.1.15
MA0118.1.16
MA0118.1.17
MA0118.1.18
MA0118.1.19
MA0118.1.2
MA0118.1.20
MA0118.1.3
MA0118.1.4
MA0118.1.5
MA0118.1.6
MA0118.1.7
MA0118.1.8
MA0118.1.9
MA0118.2.1 / MA0118.2.4 / MA0118.2.5 / MA0118.2.7 / MA0118.2.8
MA0118.2.10
MA0118.2.11
MA0118.2.12
MA0118.2.13
MA0118.2.14 / MA0118.2.15 / MA0118.2.16 / MA0118.2.2 / MA0118.2.6 / MA0118.2.9
MA0118.2.17
MA0118.2.18 / MA0118.2.19 / MA0118.2.20
MA0118.2.3
Publications: Sawada K, Fukushima Y, Nishida H. Macho-1 functions as transcriptional activator for muscle formation in embryos of the ascidian Halocynthia roretzi. Gene expression patterns : GEP 5:429-37 (2005). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.