Transcription Factor
Accessions: | Q9GRA5 (JASPAR 2024) |
Names: | Q9GRA5_HALRO |
Organisms: | Halocynthia roretzi, sea squirt |
Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Uniprot: | Q9GRA5 |
Length: | 556 |
Pfam Domains: | 272-297 Zinc-finger double domain 285-309 Zinc finger, C2H2 type 285-309 C2H2-type zinc finger 301-328 Zinc-finger double domain 315-339 C2H2-type zinc finger 345-369 C2H2-type zinc finger 345-369 Zinc finger, C2H2 type |
Sequence: (in bold interface residues) | 1 MKESENFNFSRPIDKAVHDSTYVTTHPVSYAYDNFYNPHDAAGAPVANNRQMLYHPSNSY 60 61 PSDTAGTKAHGLQVTNFYQSPYEICCNDPCKVAPHATFQSGRAISSEGFVQASSEDSYQD 120 121 NGYVSAQFDSNGKPISSNSNISMGYHQAPTALNFHSFHSFPPNKFYSPPQSMNDFYTFIR 180 181 PQQIHQQLGMCQSDYVCKWMYPANKQQLGKSTVPNEAPEVTEEPCNRVFVTLLDLVTHIS 240 241 LNHIGGSEQIDHTCYWQNCSRGKKSFKAKYKLVNHTRVHTGERPFSCPFPGCGKMFARSE 300 301 NLKIHKRIHTGERPFTCTFPGCDRRFANSSDRKKHSHVHTSDKPYTCKIKGCDKNYTHPS 360 361 SLRKHMRLHEAQGDVIHHQIDAECEKIDASNIPSSDSNNNIKRFCHSVSPGNLNTNSNIT 420 421 HIATSSMTSAPVSLTNFNSNLNQKSPKENMLYRPDGGDQNSYEIGKTAVTKMYTEPGVRA 480 481 GNGLFTEVLNTPLHAYSANDWYIYQTQRLGGMPTPPSEDRSQSNIATLCYKTSMRTEEIR 540 541 NTTLPYYYSDPYAVNE |
Interface Residues: | 180, 182, 183, 206, 231, 233, 234, 237, 241, 266, 267, 268, 269, 270, 271, 273, 274, 276, 277, 280, 285, 297, 298, 299, 300, 301, 304, 305, 306, 308, 309, 310, 313, 327, 328, 329, 330, 331, 332, 333, 334, 335, 338, 357, 358, 359, 360, 361, 363, 364, 367, 414, 416, 417, 420, 443 |
3D-footprint Homologues: | 5v3j_F, 6wmi_A, 8ssq_A, 8ssu_A, 5kkq_D, 5yel_A, 6jnm_A, 7w1m_H, 7n5w_A, 1ubd_C, 5ei9_F, 2gli_A, 5k5i_A, 6ml4_A, 1tf6_A, 7eyi_G, 8h9h_G, 6e94_A, 7ysf_A, 2lt7_A, 2i13_A, 8gn3_A, 5und_A, 2jpa_A, 2kmk_A, 3uk3_C, 8cuc_F, 1tf3_A, 7y3l_A, 5kl3_A, 1mey_C, 1f2i_J, 1g2f_F, 6blw_A, 2v6e_B, 6u9q_A, 4x9j_A, 1llm_D, 7txc_E, 4m9v_C, 7y3m_I, 6a57_A, 2wbs_A, 5yj3_D |
Binding Motifs: | MA0118.1 ygGGkGkym MA0118.2 gGGkG |
Binding Sites: | MA0118.1.1 MA0118.1.10 MA0118.1.11 MA0118.1.12 MA0118.1.13 MA0118.1.14 MA0118.1.15 MA0118.1.16 MA0118.1.17 MA0118.1.18 MA0118.1.19 MA0118.1.2 MA0118.1.20 MA0118.1.3 MA0118.1.4 MA0118.1.5 MA0118.1.6 MA0118.1.7 MA0118.1.8 MA0118.1.9 MA0118.2.1 / MA0118.2.4 / MA0118.2.5 / MA0118.2.7 / MA0118.2.8 MA0118.2.10 MA0118.2.11 MA0118.2.12 MA0118.2.13 MA0118.2.14 / MA0118.2.15 / MA0118.2.16 / MA0118.2.2 / MA0118.2.6 / MA0118.2.9 MA0118.2.17 MA0118.2.18 / MA0118.2.19 / MA0118.2.20 MA0118.2.3 |
Publications: | Sawada K, Fukushima Y, Nishida H. Macho-1 functions as transcriptional activator for muscle formation in embryos of the ascidian Halocynthia roretzi. Gene expression patterns : GEP 5:429-37 (2005). [Pubmed] |
Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.