Transcription Factor

						

			
Accessions: TFAM (DrosophilaTF 1.1)

			
Names: LD40493p, Mitochondrial transcription factor A, Mitochondrial transcription factor A, isoform A, Q9VDL2_DROME
Organisms: Drosophila melanogaster
Libraries: DrosophilaTF 1.1 1
1 Down T.A, Bergman C.M, Su J, Hubbard T.J. Large-scale discovery of promoter motifs in Drosophila melanogaster. PLoS computational biology 3:e7 (2007). [Pubmed]
Length: 257
Pfam Domains:    48-110 Domain of unknown function (DUF1898)
   51-118 HMG (high mobility group) box
Sequence: 
(in bold interface residues)		   1 MIYTTTLMSSRGGLIGSLINKVRPLAAASISNTPAVPSKTLEEQLGLPPRPKKPLTPYFR   60
  61 FMREQRPKLKAANPQITTVEVVRQLSKNWSDADAQLKERLQAEFKRDQQIYVEERTKYDA  120
 121 TLTEEQRAEIKQLKQDLVDAKERRQLRKRVKELGRPKKPASAFLRFIASERINTPQGDKQ  180
 181 TYREWHQKTTAKWTRLSDSEKEVYMQESRKEMELYRKAISVWEEKMIRLGHIDVVRHGNL  240
 241 IDPPEPKPRKTLASKDI
Interface Residues: 33, 40, 41, 43, 53, 56, 58, 59, 62, 66, 77, 78, 79, 82, 144, 147, 151, 158, 161, 163, 164, 167, 172, 180, 181, 182, 183, 184, 186
3D-footprint Homologues: 1j5n_A, 2gzk_A, 4s2q_D, 1o4x_B, 3f27_D, 4y60_C, 1qrv_A, 3tmm_A, 3tq6_B, 1hry_A, 2lef_A, 7zie_A
Binding Motifs: TFAM TTATC
Binding Sites: TFAM_1
TFAM_10
TFAM_11
TFAM_2
TFAM_3
TFAM_4
TFAM_5 / TFAM_6
TFAM_7
TFAM_8 / TFAM_9
			
Publications: Takata K.-I., Yoshida H., Hirose F., Yamaguchi M., Kai M., Oshige M., Sakimoto I., Koiwai O., Sakaguchi K. Drosophila Mitochondrial Transcription Factor A: Characterization of Its cDNA and Expression Pattern during Development.. Biochem. Biophys. Res. Commun. 287:474-483 (2001). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.