Transcription Factor

Accessions: T030342_1.02 (CISBP 1.02)
Names: 0300010272, T030342_1.02;
Organisms: Ostreococcus tauri
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:bZIP
Length: 519
Pfam Domains: 156-215 bZIP transcription factor
156-209 Basic region leucine zipper
Sequence:
(in bold interface residues)
1 MLASARTTPEMKKKTRDRERAVVSEDERNSKIFFDELPTPSTSEARAEASEKPVGWTSGS 60
61 DCTDTPWEDGESAAAVEVAAMDSFLENLVDLPVDGLVGDAGFLEDCFGALSGEERSQQEL 120
121 SACGLVKNGERWEDGASSSRATASGKDVTPTALGETEEERRKRLDRNRESAQNSRARKKE 180
181 YVSDLEKRARALEQQNMELQTMVINLTNENHALRVNLQSAGYSVPAMMVPCVYQTMTPKI 240
241 PLPPMNVQDTELTDPPSPVPLEKKPAKRRRQTVVASATAAMLGVMSVVGLVSRDAAPTNR 300
301 VPEHSVSRRLLALSGSPVEEHLVKVGINVTSLREEMVKNDDERSFALPDSTSSGEVSLWG 360
361 DITSDGRVVNVLKPTDAKDPWFSAFNAAGMQNHVNLLSRVSCTELFKFTGANEGGVVAAR 420
421 EAETSAWKDEESRQKMERKKYTGAIPMLSGKENSTSFSDGGHEEIDGNSLVSVLLPPPIE 480
481 GVMQQLSKLFVVTYNKRTADYTTHSCLMPQPMTTAHRHM
Interface Residues: 163, 167, 168, 170, 171, 174, 175
3D-footprint Homologues: 7x5e_F, 2wt7_A, 1dh3_C, 5vpe_D
Binding Motifs: M0362_1.02 rTGACGtvw
Related annotations: PaperBLAST

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.