Transcription Factor
| Accessions: | T140848_1.02 (CISBP 1.02), Q9S758 (JASPAR 2024), T15374 (AthalianaCistrome v4_May2016) |
| Names: | SPL5, T140848_1.02;, SPL5_ARATH, AT3G15270, T15374; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:SBP, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq |
| Length: | 181 |
| Pfam Domains: | 63-138 SBP domain |
| Sequence: (in bold interface residues) | 1 MEGQRTQRRGYLKDKATVSNLVEEEMENGMDGEEEDGGDEDKRKKVMERVRGPSTDRVPS 60 61 RLCQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQQCSRFHELPEFDEAK 120 121 RSCRRRLAGHNERRRKISGDSFGEGSGRRGFSGQLIQTQERNRVDRKLPMTNSSFKRPQI 180 181 R |
| Interface Residues: | 13, 15, 18, 90, 91, 92, 95, 117, 126, 130, 132 |
| 3D-footprint Homologues: | 2vbl_A, 4b21_A, 4gnx_Z |
| Binding Motifs: | M1565_1.02 ktGTACGgy MA1059.1 ktGTACGgh M0736 / MA1059.2 aayyGTACGGAh M0731 ttGTACGGay MA1059.3 yGTACGGAh |
| Binding Sites: | MA1059.2.1 MA1059.2.10 MA1059.2.11 MA1059.2.12 MA1059.2.13 MA1059.2.14 MA1059.2.15 MA1059.2.16 MA1059.2.17 MA1059.2.18 MA1059.2.19 MA1059.2.2 MA1059.2.20 MA1059.2.3 MA1059.2.4 MA1059.2.5 MA1059.2.6 MA1059.2.7 MA1059.2.8 MA1059.2.9 MA1059.3.1 MA1059.3.10 MA1059.3.11 MA1059.3.12 MA1059.3.13 MA1059.3.14 MA1059.3.15 MA1059.3.16 MA1059.3.17 MA1059.3.18 MA1059.3.19 MA1059.3.2 MA1059.3.20 MA1059.3.3 MA1059.3.4 MA1059.3.5 MA1059.3.6 MA1059.3.7 MA1059.3.8 MA1059.3.9 |
| Publications: | Yamasaki K, Kigawa T, Inoue M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S. An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure. FEBS Lett 580:2109-16 (2006). [Pubmed] |
| Related annotations: | PaperBLAST |
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