Transcription Factor
| Accessions: | O80917 (JASPAR 2024), T10073 (AthalianaCistrome v4_May2016) |
| Names: | Dehydration response element-binding protein 19, Dehydration-responsive element-binding protein 2E, DRE2E_ARATH, Protein DREB2E, AT2G38340, DREB19, T10073; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:AP2-EREBP |
| Length: | 244 |
| Pfam Domains: | 68-126 AP2 domain |
| Sequence: (in bold interface residues) | 1 MEKEDNGSKQSSSASVVSSRRRRRVVEPVEATLQRWEEEGLARARRVQAKGSKKGCMRGK 60 61 GGPENPVCRFRGVRQRVWGKWVAEIREPVSHRGANSSRSKRLWLGTFATAAEAALAYDRA 120 121 ASVMYGPYARLNFPEDLGGGRKKDEEAESSGGYWLETNKAGNGVIETEGGKDYVVYNEDA 180 181 IELGHDKTQNPMTDNEIVNPAVKSEEGYSYDRFKLDNGLLYNEPQSSSYHQGGGFDSYFE 240 241 YFRF |
| Interface Residues: | 74, 76, 77, 78, 82, 84, 86, 99, 101, 103 |
| 3D-footprint Homologues: | 5wx9_A, 7wq5_A, 1gcc_A, 7et4_D |
| Binding Motifs: | M0059 / MA1243.1 ywyhthmACCGMCwTwr M0024 wtwmACCGACATww MA1243.2 mACCGMCwTw |
| Binding Sites: | MA1243.1.1 MA1243.1.10 MA1243.1.11 MA1243.1.12 MA1243.1.13 MA1243.1.14 MA1243.1.15 MA1243.1.16 MA1243.1.17 MA1243.1.18 MA1243.1.19 MA1243.1.2 MA1243.1.20 MA1243.1.3 MA1243.1.4 MA1243.1.5 MA1243.1.6 MA1243.1.7 MA1243.1.8 MA1243.1.9 MA1243.2.1 MA1243.2.10 MA1243.2.11 MA1243.2.12 MA1243.2.13 MA1243.2.14 MA1243.2.15 MA1243.2.16 MA1243.2.17 MA1243.2.18 MA1243.2.19 MA1243.2.2 MA1243.2.20 MA1243.2.3 MA1243.2.4 MA1243.2.5 MA1243.2.6 MA1243.2.7 MA1243.2.8 MA1243.2.9 |
| Publications: | Medina J, Bargues M, Terol J, Pérez-Alonso M, Salinas J. The Arabidopsis CBF gene family is composed of three genes encoding AP2 domain-containing proteins whose expression Is regulated by low temperature but not by abscisic acid or dehydration. Plant Physiol 119:463-70 (1999). [Pubmed] |
| Related annotations: | PaperBLAST |
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