Transcription Factor
| Accessions: | T008768_1.02 (CISBP 1.02) |
| Names: | hmg-12, T008768_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:AT hook |
| Length: | 315 |
| Pfam Domains: | 95-105 AT hook motif 120-131 AT hook motif 165-176 AT hook motif 185-190 AT hook motif 210-218 AT hook motif 268-279 AT hook motif 296-305 AT hook motif |
| Sequence: (in bold interface residues) | 1 MSDVAEEKAEFLVIRTYGSESFRKECADLIEKELHKLNATIARVPVGEFVAYAENAVKNE 60 61 TDSEAVGSSSVKRENSANDSPANTNDVDIVSSPVKRGRGRKAKNPSADADVNDTGSSPVK 120 121 KGRGRPIKNPSADAGSPLVKKGRGRRAQTPAADTDAIDTASSPVKKGRGRPAKNPSADAG 180 181 SPLVKKGRGRQAKNLAADTDAIDTASSPVKKGRGRPLKKTAAEADVNGLGSPSANRITGC 240 241 PPSTKVSNQSSPPEPAVNESEEADEPVLKRGRSVKQPKDESESDDEDAEKAPAAIPKKRG 300 301 RPGKSAIDAFFDGSD |
| Interface Residues: | 219, 220, 221, 223, 224, 230 |
| 3D-footprint Homologues: | 3zhm_A |
| Binding Motifs: | M0141_1.02 atAawTAwwTra |
| Related annotations: | PaperBLAST |
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