Transcription Factor
| Accessions: | P17839 (JASPAR 2024) |
| Names: | AG_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | P17839 |
| Length: | 252 |
| Pfam Domains: | 25-75 SRF-type transcription factor (DNA-binding and dimerisation domain) 92-189 K-box region |
| Sequence: (in bold interface residues) | 1 MAYQSELGGDSSPLRKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVA 60 61 LIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISI 120 121 QNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDN 180 181 QILRAKIAENERNNPSISLMPGGSNYEQLMPPPQTQSQPFDSRNYFQVAALQPNNHHYSS 240 241 AGRQDQTALQLV |
| Interface Residues: | 19, 20, 31, 34, 35, 39 |
| 3D-footprint Homologues: | 1n6j_A, 1c7u_A, 7x1n_C, 1hbx_A, 1mnm_A |
| Binding Motifs: | MA0005.2 hTTwCCwWAwwdGGhAat MA0005.1 CCwaAwwkGGh MA0005.3 TTwCCwWAwwdGGhAa |
| Binding Sites: | MA0005.1.1 MA0005.1.10 MA0005.1.11 MA0005.1.12 MA0005.1.13 MA0005.1.14 MA0005.1.15 MA0005.1.16 MA0005.1.17 MA0005.1.18 MA0005.1.19 MA0005.1.2 MA0005.1.20 MA0005.1.3 MA0005.1.4 MA0005.1.5 MA0005.1.6 MA0005.1.7 MA0005.1.8 MA0005.1.9 |
| Publications: | Huang H., Mizukami Y., Hu Y., Ma H. Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS. Nucleic Acids Res. 21:4769-4776 (1993). [Pubmed] |
| Related annotations: | PaperBLAST |
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