Transcription Factor

Accessions: P17839 (JASPAR 2018)
Names: AG_ARATH
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2018 1
1 Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby , Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2017) JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. doi: 10.1093/nar/gkx1126 [Pubmed]
Uniprot: P17839
Length: 252
Pfam Domains: 25-75 SRF-type transcription factor (DNA-binding and dimerisation domain)
92-189 K-box region
Sequence:
(in bold interface residues)
1 MAYQSELGGDSSPLRKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVA 60
61 LIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISI 120
121 QNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDN 180
181 QILRAKIAENERNNPSISLMPGGSNYEQLMPPPQTQSQPFDSRNYFQVAALQPNNHHYSS 240
241 AGRQDQTALQLV
Interface Residues: 19, 20, 31, 34, 35, 39
3D-footprint Homologues: 1n6j_A, 1egw_B, 3p57_C, 1hbx_D, 1mnm_A
Binding Motifs: MA0005.2 hTTwCCwWAwwdGGhAat
MA0005.1 CCwaAwwkGGh
Binding Sites: MA0005.1.1
MA0005.1.10
MA0005.1.11
MA0005.1.12
MA0005.1.13
MA0005.1.14
MA0005.1.15
MA0005.1.16
MA0005.1.17
MA0005.1.18
MA0005.1.19
MA0005.1.2
MA0005.1.20
MA0005.1.3
MA0005.1.4
MA0005.1.5
MA0005.1.6
MA0005.1.7
MA0005.1.8
MA0005.1.9
Publications: Huang H., Mizukami Y., Hu Y., Ma H. Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS. Nucleic Acids Res. 21:4769-4776 (1993). [Pubmed]
Related annotations: PaperBLAST

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