Transcription Factor

Accessions: A8WVZ2 (JASPAR 2024)
Names: A8WVZ2_CAEBR
Organisms: Caenorhabditis briggsae
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: A8WVZ2
Length: 458
Pfam Domains: 58-113 LIM domain
121-175 LIM domain
269-324 Homeobox domain
Sequence:
(in bold interface residues)
1 MAANICMRSAYELFSITSPGTSDLDLGASFWKEEPDSKYLCLDSPVEQRQQQQPMAVCAG 60
61 CRLEIADRYFLRVHPDMEFHAHCLKCAQCARPLDENQTAFVKDGHTYCKDDYRSIFKTTR 120
121 CTRCHGEFDKSDLVMRAGDLNVFHLHCFSCVACEKRLQTGEEFQIKNNNVYCRADCQGIE 180
181 RPDRSDSLPDFSKLSNNNNDTNNSSSNFDEDEWDEERSTLTSLDNNTSSPLGSPKSDGVQ 240
241 TPLYGHHNSGSGGSSSSCGKKKKDKQATRVRTVLNEQQLKILKDCYSCNSRPDASLKEKL 300
301 VEMTGLNARVIRVWFQNKRCKDKKRQIQITESRINSEREDVLTRVRINGIGPLMVQPPTP 360
361 HIDTTLGGGPIDIHSFAQWSTTPTPPQFGNPMMFNSPVEMPPYGVTPILPPGSVISTSSE 420
421 VLGPPGAAIFPHYSPQQQHSSLTASSHPMSSPISSCSD
Interface Residues: 263, 269, 270, 271, 309, 310, 312, 313, 316, 317, 320, 321, 324, 352
3D-footprint Homologues: 3l1p_A, 1jgg_B, 3lnq_A, 2lkx_A, 6m3d_C, 5flv_I, 3d1n_M, 2hdd_A, 7psx_B, 5hod_A, 2hos_A, 1au7_A, 6a8r_A, 1puf_B, 1fjl_B, 2ld5_A, 1b72_A, 4xrs_G, 3cmy_A, 2h1k_B, 1ig7_A, 5zfz_A, 3rkq_B, 5jlw_D, 1e3o_C, 1le8_A, 2xsd_C, 7q3o_C, 7xrc_C, 8g87_X, 5zjt_E, 4cyc_A, 2r5y_A, 1puf_A, 4qtr_D, 1nk2_P, 6es3_K, 1o4x_A, 1du0_A
Binding Motifs: MA1441.1 tctTAATkkmt
MA1441.2 tTAATk
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.