Transcription Factor
Accessions: | A8WVZ2 (JASPAR 2024) |
Names: | A8WVZ2_CAEBR |
Organisms: | Caenorhabditis briggsae |
Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Uniprot: | A8WVZ2 |
Length: | 458 |
Pfam Domains: | 58-113 LIM domain 121-175 LIM domain 269-324 Homeobox domain |
Sequence: (in bold interface residues) | 1 MAANICMRSAYELFSITSPGTSDLDLGASFWKEEPDSKYLCLDSPVEQRQQQQPMAVCAG 60 61 CRLEIADRYFLRVHPDMEFHAHCLKCAQCARPLDENQTAFVKDGHTYCKDDYRSIFKTTR 120 121 CTRCHGEFDKSDLVMRAGDLNVFHLHCFSCVACEKRLQTGEEFQIKNNNVYCRADCQGIE 180 181 RPDRSDSLPDFSKLSNNNNDTNNSSSNFDEDEWDEERSTLTSLDNNTSSPLGSPKSDGVQ 240 241 TPLYGHHNSGSGGSSSSCGKKKKDKQATRVRTVLNEQQLKILKDCYSCNSRPDASLKEKL 300 301 VEMTGLNARVIRVWFQNKRCKDKKRQIQITESRINSEREDVLTRVRINGIGPLMVQPPTP 360 361 HIDTTLGGGPIDIHSFAQWSTTPTPPQFGNPMMFNSPVEMPPYGVTPILPPGSVISTSSE 420 421 VLGPPGAAIFPHYSPQQQHSSLTASSHPMSSPISSCSD |
Interface Residues: | 263, 269, 270, 271, 309, 310, 312, 313, 316, 317, 320, 321, 324, 352 |
3D-footprint Homologues: | 3l1p_A, 1jgg_B, 3lnq_A, 2lkx_A, 6m3d_C, 5flv_I, 3d1n_M, 2hdd_A, 7psx_B, 5hod_A, 2hos_A, 1au7_A, 6a8r_A, 1puf_B, 1fjl_B, 2ld5_A, 1b72_A, 4xrs_G, 3cmy_A, 2h1k_B, 1ig7_A, 5zfz_A, 3rkq_B, 5jlw_D, 1e3o_C, 1le8_A, 2xsd_C, 7q3o_C, 7xrc_C, 8g87_X, 5zjt_E, 4cyc_A, 2r5y_A, 1puf_A, 4qtr_D, 1nk2_P, 6es3_K, 1o4x_A, 1du0_A |
Binding Motifs: | MA1441.1 tctTAATkkmt MA1441.2 tTAATk |
Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.