Transcription Factor
| Accessions: | Q570R7 (JASPAR 2024), T21780 (AthalianaCistrome v4_May2016) |
| Names: | AtbHLH72, Basic helix-loop-helix protein 72, bHLH 72, bHLH transcription factor bHLH072, Phytochrome-interacting factor 7, PIF7_ARATH, Transcription factor EN 109, Transcription factor PIF7, AT5G61270, PIF7, T21780; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:bHLH |
| Length: | 366 |
| Pfam Domains: | 171-216 Helix-loop-helix DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MSNYGVKELTWENGQLTVHGLGDEVEPTTSNNPIWTQSLNGCETLESVVHQAALQQPSKF 60 61 QLQSPNGPNHNYESKDGSCSRKRGYPQEMDRWFAVQEESHRVGHSVTASASGTNMSWASF 120 121 ESGRSLKTARTGDRDYFRSGSETQDTEGDEQETRGEAGRSNGRRGRAAAIHNESERRRRD 180 181 RINQRMRTLQKLLPTASKADKVSILDDVIEHLKQLQAQVQFMSLRANLPQQMMIPQLPPP 240 241 QSVLSIQHQQQQQQQQQQQQQQQQQFQMSLLATMARMGMGGGGNGYGGLVPPPPPPPMMV 300 301 PPMGNRDCTNGSSATLSDPYSAFFAQTMNMDLYNKMAAAIYRQQSDQTTKVNIGMPSSSS 360 361 NHEKRD |
| Interface Residues: | 170, 171, 172, 174, 175, 178, 179, 201 |
| 3D-footprint Homologues: | 1an4_A, 5nj8_D, 4h10_A, 7d8t_A, 5gnj_I, 7xi3_A, 5v0l_A, 7f2f_B, 5i50_B, 1am9_A, 4zpk_A, 7ssa_L, 6g1l_A, 5eyo_A, 4h10_B, 8osl_P, 8osl_O, 7xi3_B, 7z5k_B, 7xhv_B, 5nj8_C, 5v0l_B |
| Binding Motifs: | M0176 / MA1364.1 swkrrwsCCACGTGg MA1364.2 sCCACGTGg |
| Publications: | Huq E., Al-Sady B., Hudson M., Kim C., Apel K., Quail P. H. Phytochrome-interacting factor 1 is a critical bHLH regulator of chlorophyll biosynthesis.. Science 305:1937-1941 (2004). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.