Transcription Factor
| Accessions: | Q41800 (JASPAR 2024) |
| Names: | Dof2, Fragment, Q41800_MAIZE |
| Organisms: | Zea mays, Zea mays subsp. mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 225 |
| Pfam Domains: | 18-74 Dof domain, zinc finger |
| Sequence: (in bold interface residues) | 1 KGYPVPVAKEERPAPGGDPCPRCGSRDTKFCYYNNYNTSQPRHLCKSCRRYWTKGGSLRN 60 61 VPVGGGTRKSSSSSSSSSAATTTTTTTSTSPGAAPKATKRSKNSKRRRVAPAPDPAAPGT 120 121 DASTADVASTAPSAATVAASEKPSATEHAAAAVATEKPPAAPPVSVGAFADTSPAPDAGS 180 181 GGVRELLPHPSRFEWPSGCDLGPPYWGWGTSVLADTDPALFLNLP |
| Interface Residues: | 25, 28, 32, 39, 40, 54, 57 |
| 3D-footprint Homologues: | 8cuc_F, 1k3x_A |
| Binding Motifs: | MA0020.1 AAAGcm MA0020.2 AAAGc |
| Binding Sites: | MA0020.1.1 / MA0020.1.2 MA0020.1.10 / MA0020.1.11 MA0020.1.12 MA0020.1.13 / MA0020.1.14 MA0020.1.15 MA0020.1.16 MA0020.1.17 / MA0020.1.18 MA0020.1.19 / MA0020.1.20 MA0020.1.3 / MA0020.1.4 MA0020.1.5 / MA0020.1.6 MA0020.1.7 MA0020.1.8 MA0020.1.9 MA0020.2.1 / MA0020.2.2 / MA0020.2.7 MA0020.2.10 / MA0020.2.11 MA0020.2.12 / MA0020.2.8 / MA0020.2.9 MA0020.2.13 / MA0020.2.14 MA0020.2.15 MA0020.2.16 MA0020.2.17 / MA0020.2.18 MA0020.2.19 / MA0020.2.20 MA0020.2.3 / MA0020.2.4 MA0020.2.5 / MA0020.2.6 |
| Publications: | Yanagisawa S., Schmidt R. J. Diversity and similarity among recognition sequences of Dof transcription factors.. Plant J. 17:209-214 (1999). [Pubmed] |
| Related annotations: | PaperBLAST |
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