Transcription Factor
Accessions: | T090213_1.02 (CISBP 1.02), P46668 (JASPAR 2024), T10012 (AthalianaCistrome v4_May2016) |
Names: | ATHB6, T090213_1.02;, ATHB6_ARATH, HD-ZIP protein ATHB-6, Homeobox-leucine zipper protein ATHB-6, Homeodomain transcription factor ATHB-6, AT2G22430, T10012; |
Organisms: | Arabidopsis thaliana |
Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
Notes: | experiment type:PBM, family:Homeodomain, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:Homeobox |
Length: | 311 |
Pfam Domains: | 62-115 Homeobox domain 117-159 Homeobox associated leucine zipper |
Sequence: (in bold interface residues) | 1 MMKRLSSSDSVGGLISLCPTTSTDEQSPRRYGGREFQSMLEGYEEEEEAIVEERGHVGLS 60 61 EKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 120 121 KDYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLKTKLNGGGGEEEEEENNAAVTTESDI 180 181 SVKEEEVSLPEKITEAPSSPPQFLEHSDGLNYRSFTDLRDLLPLKAAASSFAAAAGSSDS 240 241 SDSSALLNEESSSNVTVAAPVTVPGGNFFQFVKMEQTEDHEDFLSGEEACEFFSDEQPPS 300 301 LHWYSTVDHWN |
Interface Residues: | 61, 62, 63, 64, 65, 67, 101, 102, 104, 105, 108, 109, 112, 113, 115, 116 |
3D-footprint Homologues: | 1zq3_P, 1puf_A, 3d1n_M, 1b72_A, 1nk2_P, 1au7_A, 3l1p_A, 2ld5_A, 5jlw_D, 1ig7_A, 7q3o_C, 1e3o_C, 1le8_A, 7xrc_C, 8g87_X, 5zjt_E, 4qtr_D, 3a01_E, 7psx_B, 5hod_A, 3lnq_A, 1o4x_A, 1du0_A, 6a8r_A, 4xrm_B, 3cmy_A, 2h1k_B, 1jgg_B, 3rkq_B, 2lkx_A, 6es3_K, 4xrs_G, 2hdd_A, 5zfz_A, 4cyc_A, 2r5y_A, 1puf_B, 1fjl_B, 5flv_I, 2hos_A, 6m3d_C |
Binding Motifs: | M0843_1.02 bcAATmATk MA0953.1 bcAATmATk M0430 yAATmATthwy M0440 tCAATAATTga MA0953.2 cAATmAT |
Binding Sites: | MA0953.1.1 MA0953.1.10 MA0953.1.11 MA0953.1.12 MA0953.1.13 MA0953.1.14 MA0953.1.15 MA0953.1.16 MA0953.1.17 MA0953.1.18 MA0953.1.19 MA0953.1.2 MA0953.1.20 MA0953.1.3 MA0953.1.4 MA0953.1.5 MA0953.1.6 MA0953.1.7 MA0953.1.8 MA0953.1.9 MA0953.2.1 MA0953.2.10 MA0953.2.11 MA0953.2.12 MA0953.2.13 MA0953.2.14 MA0953.2.15 MA0953.2.16 MA0953.2.17 MA0953.2.18 MA0953.2.19 MA0953.2.2 MA0953.2.20 MA0953.2.3 MA0953.2.4 MA0953.2.5 MA0953.2.6 MA0953.2.7 MA0953.2.8 MA0953.2.9 |
Publications: | Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). [Pubmed] |
Related annotations: | PaperBLAST |
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