Transcription Factor

						

			
Accessions: A1YPR0 (JASPAR 2024)

			
Names: Affected by papillomavirus DNA integration in ME180 cells protein 1, APM-1, ZBT7C_HUMAN, Zinc finger and BTB domain-containing protein 36, Zinc finger and BTB domain-containing protein 7C, Zinc finger protein 857C
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: A1YPR0
Length: 619
Pfam Domains:    24-127 BTB/POZ domain
  381-402 Zinc-finger double domain
  392-414 C2H2-type zinc finger
  392-414 Zinc finger, C2H2 type
  407-431 Zinc-finger double domain
  420-442 C2H2-type zinc finger
  434-459 Zinc-finger double domain
  448-469 C2H2-type zinc finger
  448-469 Zinc finger, C2H2 type
Sequence: 
(in bold interface residues)		   1 MANDIDELIGIPFPNHSSEVLCSLNEQRHDGLLCDVLLVVQEQEYRTHRSVLAACSKYFK   60
  61 KLFTAGTLASQPYVYEIDFVQPEALAAILEFAYTSTLTITAGNVKHILNAARMLEIQCIV  120
 121 NVCLEIMEPGGDGGEEDDKEDDDDDEDDDDEEDEEEEEEEEEDDDDDTEDFADQENLPDP  180
 181 QDISCHQSPSKTDHLTEKAYSDTPRDFPDSFQAGSPGHLGVIRDFSIESLLRENLYPKAN  240
 241 IPDRRPSLSPFAPDFFPHLWPGDFGAFAQLPEQPMDSGPLDLVIKNRKIKEEEKEELPPP  300
 301 PPPPFPNDFFKDMFPDLPGGPLGPIKAENDYGAYLNFLSATHLGGLFPPWPLVEERKLKP  360
 361 KASQQCPICHKVIMGAGKLPRHMRTHTGEKPYMCTICEVRFTRQDKLKIHMRKHTGERPY  420
 421 LCIHCNAKFVHNYDLKNHMRIHTGVRPYQCEFCYKSFTRSDHLHRHIKRQSCRMARPRRG  480
 481 RKPAAWRAASLLFGPGGPAPDKAAFVMPPALGEVGGHLGGAAVCLPGPSPAKHFLAAPKG  540
 541 ALSLQELERQFEETQMKLFGRAQLEAERNAGGLLAFALAENVAAARPYFPLPDPWAAGLA  600
 601 GLPGLAGLNHVASMSEANN
Interface Residues: 350, 352, 353, 356, 374, 375, 376, 377, 378, 380, 381, 383, 384, 387, 400, 401, 402, 403, 404, 405, 406, 409, 413, 430, 431, 432, 433, 434, 435, 436, 437, 438, 458, 459, 460, 461, 462, 463, 464, 465, 466, 469
3D-footprint Homologues: 6wmi_A, 7y3l_A, 7n5w_A, 6jnm_A, 8cuc_F, 8ssu_A, 6ml4_A, 5v3j_F, 5kkq_D, 5ei9_F, 5k5i_A, 8ssq_A, 7w1m_H, 5und_A, 8h9h_G, 7eyi_G, 2lt7_A, 1tf6_A, 2i13_A, 7y3m_I, 6e94_A, 7ysf_A, 2jpa_A, 1ubd_C, 1hwt_C, 1tf3_A, 4x9j_A, 1llm_D, 6blw_A, 6u9q_A, 5yel_A, 1mey_C, 7txc_E, 5kl3_A, 1g2f_F, 2kmk_A, 2gli_A, 5k5l_F, 6a57_A, 3uk3_C, 8gn3_A, 2wbs_A, 1f2i_J, 2drp_D, 5yj3_D, 4m9v_C
Binding Motifs: MA0695.1 rcgACCACCgam
MA0695.2 cgACCACC
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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