Transcription Factor

Accessions: T12002 (AthalianaCistrome v4_May2016), Q38837 (JASPAR 2018)
Names: AGL13, AT3G61120, T12002;, AGL13_ARATH
Organisms: Arabidopsis thaliana, Arabidopsis thaliana Col-0
Libraries: AthalianaCistrome v4_May2016 1, JASPAR 2018 2
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
2 [Pubmed]
Notes: ecotype:Col-0, experiment type: DAP-seq, family:MADS
Length: 244
Pfam Domains: 9-59 SRF-type transcription factor (DNA-binding and dimerisation domain)
82-169 K-box region
Sequence:
(in bold interface residues)
1 MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNV 60
61 GVGRTIERYYRCKDNLLDNDTLEDTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIK 120
121 ELQTLERQLEGALSATRKQKTQVMMEQMEELRRKERELGDINNKLKLETEDHDFKGFQDL 180
181 LLNPVLTAGCSTDFSLQSTHQNYISDCNLGYFLQIGFQQHYEQGEGSSVTKSNARSDAET 240
241 NFVQ
Interface Residues: 3, 4, 15, 18, 19, 23
3D-footprint Homologues: 1hbx_D, 1n6j_A, 1egw_B, 1mnm_A
Binding Motifs: M0487 AwrGwAAaw
MA1204.1 WTwCYaAAAAwrGwAAaw
Publications: Tang W., Perry S. E. Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study.. J. Biol. Chem. 278:28154-28159 (2003). [Pubmed]

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