Transcription Factor
Accessions: | LHX3_MOUSE (HOCOMOCO 10), P50481 (JASPAR 2024) |
Names: | Homeobox protein LIM-3, Homeobox protein P-LIM, LHX3_MOUSE, LIM homeobox protein 3, LIM/homeobox protein Lhx3 |
Organisms: | Mus musculus |
Libraries: | HOCOMOCO 10 1, JASPAR 2024 2 1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Length: | 400 |
Pfam Domains: | 34-89 LIM domain 93-150 LIM domain 161-217 Homeobox domain |
Sequence: (in bold interface residues) | 1 MLLEAELDCHRERPGAPGASALCTFSRTPEIPMCAGCDQHILDRFILKALDRHWHSKCLK 60 61 CSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFA 120 121 CVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAYN 180 181 TSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGS 240 241 SKSDKDSIQEGQDSDAEVSFTDEPSMADMGPANGLYSSLGEPAPALGRPVGGLGSFTLDH 300 301 GGLTGPEQYRELRPGSPYGIPPSPAAPQSLPGPQPLLSSLVYPDTNLSLVPSGPPGGPPP 360 361 MRVLAGNGPSSDLSTESSSGYPDFPASPASWLDEVDHAQF |
Interface Residues: | 161, 162, 163, 164, 202, 203, 205, 206, 209, 210, 213, 214, 217 |
3D-footprint Homologues: | 1fjl_B, 6a8r_A, 3cmy_A, 1ig7_A, 3d1n_M, 5zfz_A, 1puf_A, 5zjt_E, 2h1k_B, 3lnq_A, 2lkx_A, 1nk2_P, 1zq3_P, 1jgg_B, 6m3d_C, 6es3_K, 2ld5_A, 7q3o_C, 6ryd_F, 1au7_A, 5hod_A, 1puf_B, 2hdd_A, 6wig_A, 1b72_A, 5jlw_D, 3rkq_B, 2r5y_A, 4xrs_G, 2hos_A, 7psx_B, 4cyc_A, 2d5v_B, 5flv_I, 3l1p_A, 3a01_E, 1le8_A, 7xrc_C, 2xsd_C, 1e3o_C, 4xrm_B, 8g87_X, 1o4x_A, 1du0_A, 4qtr_D |
Binding Motifs: | LHX3_MOUSE.H10MO.C|M01193 aaAaTTAATTAry MA0135.1 wAATTAATTAwyy PH0093.1 sdaaTTAATTAAwwmmk MA0135.2 wAATTAATTAwy |
Binding Sites: | MA0135.1.1 MA0135.1.10 MA0135.1.11 MA0135.1.12 MA0135.1.13 MA0135.1.14 MA0135.1.15 MA0135.1.16 MA0135.1.17 MA0135.1.18 MA0135.1.19 MA0135.1.2 / MA0135.1.3 MA0135.1.20 MA0135.1.4 / MA0135.1.5 MA0135.1.6 MA0135.1.7 MA0135.1.8 MA0135.1.9 MA0135.2.1 MA0135.2.10 MA0135.2.11 MA0135.2.12 MA0135.2.13 MA0135.2.14 / MA0135.2.8 MA0135.2.15 / MA0135.2.16 MA0135.2.17 MA0135.2.18 MA0135.2.19 MA0135.2.2 / MA0135.2.3 MA0135.2.20 MA0135.2.4 / MA0135.2.5 MA0135.2.6 MA0135.2.7 MA0135.2.9 |
Publications: | Bridwell J. L., Price J. R., Parker G. E., McCutchan Schiller A., Sloop K. W., Rhodes S. J. Role of the LIM domains in DNA recognition by the Lhx3 neuroendocrine transcription factor.. Gene 277:239-250 (2001). [Pubmed] Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.