Transcription Factor

Accessions: T105398_1.02 (CISBP 1.02)
Names: AAH72060, T105398_1.02;
Organisms: Xenopus laevis
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Homeodomain,POU
Length: 385
Pfam Domains: 205-278 Pou domain - N-terminal to homeobox domain
297-353 Homeobox domain
Sequence:
(in bold interface residues)
1 MATTASNHYNLLGSGSSIVHADPGGMQQAQSYRDAQTLVQSDYTLQSNGHPLSHAHQWIT 60
61 ALSHGDGAPWATSPLGQQDIKPTVQSSRDELHGSGTLQHQSRAPHLVHPAHGNHHGPGAW 120
121 RSTGSTHLSSMASSNGQGLLYSQPSFTVNGMINPGSGQGMHHHGLRDSHDDHHGDHGHQQ 180
181 PSQTQQQQQQHSQLQGGHHDHSDEDTPTSDDLEQFAKQFKQRRIKLGFTQADVGLALGTL 240
241 YGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSSGSPTSIDKIAAQGRKRKKR 300
301 TSIEVSVKGALESHFLKCPKPAAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGT 360
361 IPGAEDVYGASRDTPPHLGVQTSVQ
Interface Residues: 6, 20, 30, 34, 36, 38, 64, 66, 70, 72, 73, 75, 80, 230, 246, 247, 248, 249, 251, 252, 258, 262, 295, 297, 298, 299, 300, 338, 339, 341, 342, 345, 346, 349, 350, 353
3D-footprint Homologues: 4rd5_A, 3d1n_M, 3l1p_A, 7u0g_M, 1o4x_A, 1e3o_C, 7xrc_C, 1au7_A, 2xsd_C, 8g87_X, 3lnq_A, 2h1k_B, 5zfz_A, 1puf_A, 1fjl_B, 5zjt_E, 1ig7_A, 6a8r_A, 3cmy_A, 2lkx_A, 1nk2_P, 1zq3_P, 1jgg_B, 2r5y_A, 4xrs_G, 3a01_E, 1puf_B, 5hod_A, 3rkq_B, 2ld5_A, 5jlw_D, 1le8_A, 7q3o_C, 6es3_K, 1k61_B, 4cyc_A, 7psx_B, 5flv_I, 1b72_A, 4qtr_D, 1du0_A
Binding Motifs: M1247_1.02 wwykmATwaw
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.