Transcription Factor
| Accessions: | REM1 (ArabidopsisPBM 20140210), Q84J39 (JASPAR 2024) |
| Names: | ATREM1, REM1, B3 domain-containing protein REM1, Protein REPRODUCTIVE MERISTEM 1, REM1_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | ArabidopsisPBM 20140210 1, JASPAR 2024 2 1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | B3 (REM) |
| Length: | 517 |
| Pfam Domains: | 32-90 B3 DNA binding domain 162-257 B3 DNA binding domain 286-385 B3 DNA binding domain |
| Sequence: (in bold interface residues) | 1 MADPPHFSLFQQKFRTGDKPFLTLDADFLMNHTKVLLKSDASDKVWKVKLDGGRLSEGWE 60 61 EFACDQKFRDGDVLVFKHHGDEVFHVAVVSPSVSGDIRNASSSQVITEDTYIDVDDVDDD 120 121 DYGQDDEDDDDDDDEGEDNIENISEKTDKRQEADSSSDHSGFITARVTRYSLLHDRLDLS 180 181 RNFTLLFGGHQKTCEIDVVDEQGRRWTMKLAKNISSGVFYIRLGWGNFCCANGLTQGDLC 240 241 KFKLFQNEERPVLWLCPQESGNGRKEKRTFDEVSKGKEKKTPSPFLIVKYTPSRETTGQL 300 301 SLPVSFTRNNSINKTGEVILLNQDGRKWSSYLQITGLGRGAGSEWFYLRRGWREMCEANG 360 361 VGVNDSFKLELVWEGANPMFKFCSKIENHEYKGKGNQRTRKKRACETAPQPRNVKKTPRL 420 421 GVEGPVYQVDEERGHTQVSNRTNTISGNLQRLLPPSCSVSDQVANVKQGIVDSLNTVRQC 480 481 RTELETSEQNLQASLLAIDALGERIWGISKILSSNLV |
| Interface Residues: | 15, 24, 35, 37, 43, 44, 45, 53, 58, 59, 60, 82, 84, 85, 86, 88, 90, 92, 94 |
| 3D-footprint Homologues: | 4hja_A, 7et6_A |
| Binding Motifs: | REM1 gCTACAtCww REM1_2 cCGTGTAGAs UN0407.1 wGwTGTAGm UN0407.2 GwTGTAG |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.