Transcription Factor

						

			
Accessions: T008200_1.02 (CISBP 1.02)

			
Names: 21.m00216, T008200_1.02;
Organisms: Tetrahymena thermophila
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:ARID/BRIGHT
Length: 651
Pfam Domains:      3-92 ARID/BRIGHT DNA binding domain
Sequence: 
(in bold interface residues)		   1 MNESEESKSFKVQLMEYWSSKNMSNIKIPQIGGRELDFFKLYKAVIKRGGAQAVSNNKMW   60
  61 KEIVNEFGFPSTCTSASFTLRNHYTRFLLGYEQKYFFHKGDEEAMPVLQAGRKRKRKDNQ  120
 121 DSKQGDSSETGSDSEEAKDQIEKKVKPNQPNNLSIVQQPNKEDVKILNQQFIRPNQLKSN  180
 181 PYPVMRMEPPKQEQNKSTLYKQLSEAYQLNQINTRQELFFTRKNKMFPMVQDIKRISLAF  240
 241 ESRIQDEITFALNQLLLYSVNSMHQFTLESYNHLLEGIVQYLEEIIKNVPSLNKILQLKE  300
 301 IKPRTLQEYGGTSDYSYSGPPPTKEAFKELCILDNYNFPICDIVLFNSQKKKEVSPIVFL  360
 361 RKRKRYNVENLKEMAGEVYLLEQTRTIFLILRNFSFTKSNEVYMAKNERLLQIMIQLFIL  420
 421 NSDSQITKYILDILANISKQIQLMNIPDYKLFCERLFELLNADTSDELEACVDIIRNLIA  480
 481 IQENESIIENFLPKYIDQVTRLMLQAQGDIREGILEFLCFLSDLRMATRVQLARHPKLIM  540
 541 RMVGLLSSGVMKQNRQLPSHLQQQQHNQQGEGERNSEKITKLAALTLSNISLAPLSRAYL  600
 601 KPFERDLFVVASTDETVTKYISNILSELMNYEPESDPERQYMFQSINMANI
Interface Residues: 61, 74, 75, 78, 79
3D-footprint Homologues: 2oeh_A, 1kqq_A
Binding Motifs: M0116_1.02 yttaATtwa
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.