Transcription Factor
Accessions: | T061536_1.02 (CISBP 1.02), P08153 (JASPAR 2024) |
Names: | SWI5, T061536_1.02;, SWI5_YEAST |
Organisms: | Saccharomyces cerevisiae |
Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Notes: | experiment type:PBM, family:C2H2 ZF |
Length: | 709 |
Pfam Domains: | 550-574 Zinc finger, C2H2 type 568-592 Zinc-finger double domain 580-604 Zinc finger, C2H2 type |
Sequence: (in bold interface residues) | 1 MDTSNSWFDASKVQSLNFDLQTNSYYSNARGSDPSSYAIEGEYKTLATDDLGNILNLNYG 60 61 ETNEVIMNEINDLNLPLGPLSDEKSVKVSTFSELIGNDWQSMNFDLENNSREVTLNATSL 120 121 LNENRLNQDSGMTVYQKTMSDKPHDEKKISMADNLLSTINKSEINKGFDRNLGELLLQQQ 180 181 QELREQLRAQQEANKKLELELKQTQYKQQQLQATLENSDGPQFLSPKRKISPASENVEDV 240 241 YANSLSPMISPPMSNTSFTGSPSRRNNRQKYCLQRKNSSGTVGPLCFQELNEGFNDSLIS 300 301 PKKIRSNPNENLSSKTKFITPFTPKSRVSSATSNSANITPNNLRLDFKINVEDQESEYSE 360 361 KPLGLGIELLGKPGPSPTKSVSLKSASVDIMPTIPGSVNNTPSVNKVSLSSSYIDQYTPR 420 421 GKQLHFSSISENALGINAATPHLKPPSQQARHREGVFNDLDPNVLTKNTDNEGDDNEENE 480 481 PESRFVISETPSPVLKSQSKYEGRSPQFGTHIKEINTYTTNSPSKITRKLTTLPRGSIDK 540 541 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDRPYSCDHPGCDKAFVRNHDLIRH 600 601 KKSHQEKAYACPCGKKFNREDALVVHRSRMICSGGKKYENVVIKRSPRKRGRPRKDGTSS 660 661 VSSSPIKENINKDHNGQLMFKLEDQLRRERSYDGNGTGIMVSPMKTNQR |
Interface Residues: | 532, 534, 535, 540, 550, 562, 563, 564, 565, 566, 568, 569, 570, 571, 572, 575, 591, 592, 593, 594, 595, 596, 597, 598, 599, 600, 603, 618, 619, 620, 621, 622, 623, 624, 625, 628, 629 |
3D-footprint Homologues: | 6ml4_A, 2kmk_A, 8cuc_F, 7y3l_A, 7n5w_A, 1tf3_A, 3uk3_C, 1ubd_C, 6a57_A, 5k5l_F, 1mey_C, 5v3j_F, 4x9j_A, 2gli_A, 8gn3_A, 6blw_A, 5kkq_D, 6u9q_A, 5ei9_F, 2i13_A, 1g2f_F, 5kl3_A, 1tf6_A, 7ysf_A, 5k5i_A, 1llm_D, 6jnm_A, 5und_A, 4m9v_C, 8h9h_G, 7eyi_G, 7y3m_I, 6e94_A, 6wmi_A, 2jpa_A, 7w1m_H, 1f2i_J, 2wbs_A, 5yel_A, 7txc_E, 5yj3_D, 8ssq_A |
Binding Motifs: | M0507_1.02 artGCTGGThm MA0402.1 tGCTGGkh MA0402.2 tGCTGGk |
Publications: | Badis G, Chan E.T, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson C.D, Gossett A.J, Hasinoff M.J, Warren C.L, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo Z.X, Clarke N.D, Lieb J.D, Ansari A.Z, Nislow C, Hughes T.R. A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Molecular cell 32:878-87 (2008). [Pubmed] |
Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.