Transcription Factor
| Accessions: | Q8BX39 (JASPAR 2024) |
| Names: | Cytoplasmic polyadenylated homeobox, Cytoplasmic polyadenylated homeobox 1, Cytoplasmic polyadenylated homeobox 2, Cytoplasmic polyadenylated homeobox 3, Homeobox protein ESO1, Q8BX39_MOUSE |
| Organisms: | Mus musculus |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 182 |
| Pfam Domains: | 29-81 Homeobox domain 49-81 Homeobox KN domain |
| Sequence: (in bold interface residues) | 1 MLSKNFPGAPETKDNRSKARKRYGSRNSKPRHKFSRDELKRLKQEFAYAPYPDFTTKDEL 60 61 ARQFQCEVSVIDNWFQNKRARLAPELKSKISAMRRMRRCQDYMRTGHQDTQPPKASGEQY 120 121 SSCDSVVRSIGRQSIGTVEHQGAAGRESSFRPTNFTFPPVYEQYYMGDQLETQETQYFTF 180 181 SY |
| Interface Residues: | 26, 28, 29, 30, 31, 32, 33, 69, 72, 73, 76, 77, 80, 81 |
| 3D-footprint Homologues: | 3cmy_A, 2h1k_B, 3d1n_M, 2lkx_A, 6m3d_C, 1zq3_P, 2ld5_A, 3a01_E, 1ig7_A, 5hod_A, 3lnq_A, 1puf_A, 1b72_A, 2hdd_A, 1jgg_B, 5jlw_D, 3rkq_B, 4xrs_G, 2hos_A, 7psx_B, 4cyc_A, 1fjl_B, 5flv_I, 1k61_B, 1mnm_C, 7q3o_C, 7xrc_C, 2xsd_C, 5zjt_E, 4qtr_D, 6fqq_E, 6a8r_A, 4xrm_B, 2r5y_A, 1puf_B, 8g87_X, 1du0_A, 6es3_K, 5zfz_A, 6fqp_B, 3l1p_A |
| Binding Motifs: | PH0014.1 rTGATssmATCAaw |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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