Transcription Factor
| Accessions: | Q84LH8 (JASPAR 2024) |
| Names: | AtbHLH65, Basic helix-loop-helix protein 65, bHLH 65, bHLH transcription factor bHLH065, Phytochrome interacting factor-like 6, Phytochrome-interacting factor 5, PIF5_ARATH, Transcription factor EN 103, Transcription factor PIF5 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q84LH8 |
| Length: | 444 |
| Pfam Domains: | 260-306 Helix-loop-helix DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MEQVFADWNFEDNFHMSTNKRSIRPEDELVELLWRDGQVVLQSQARREPSVQVQTHKQET 60 61 LRKPNNIFLDNQETVQKPNYAALDDQETVSWIQYPPDDVIDPFESEFSSHFFSSIDHLGG 120 121 PEKPRTIEETVKHEAQAMAPPKFRSSVITVGPSHCGSNQSTNIHQATTLPVSMSDRSKNV 180 181 EERLDTSSGGSSGCSYGRNNKETVSGTSVTIDRKRKHVMDADQESVSQSDIGLTSTDDQT 240 241 MGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTDKASILDEAID 300 301 YLKSLQMQLQVMWMGSGMAAAAAAAASPMMFPGVQSSPYINQMAMQSQMQLSQFPVMNRS 360 361 APQNHPGLVCQNPVQLQLQAQNQILSEQLARYMGGIPQMPPAGNQMQTVQQQPADMLGFG 420 421 SPAGPQSQLSAPATTDSLHMGKIG |
| Interface Residues: | 203, 227, 236, 261, 262, 264, 265, 268, 269, 291 |
| 3D-footprint Homologues: | 5n8r_B, 5v0l_A, 5eyo_A, 7f2f_B, 4h10_A, 8osl_O, 5gnj_I, 1a0a_B, 7rcu_E, 5nj8_D, 6g1l_A, 5i50_B, 1am9_A, 7ssa_L, 4zpk_A, 7d8t_A, 7xi3_A, 4h10_B, 8osl_P, 1an4_A, 5sy7_B, 5nj8_C, 5v0l_B |
| Binding Motifs: | MA0562.1 YCACRTGs |
| Binding Sites: | MA0562.1.1 MA0562.1.10 MA0562.1.11 MA0562.1.12 MA0562.1.13 MA0562.1.14 MA0562.1.15 MA0562.1.16 MA0562.1.17 MA0562.1.18 MA0562.1.19 MA0562.1.2 MA0562.1.20 MA0562.1.3 MA0562.1.4 MA0562.1.5 MA0562.1.6 MA0562.1.7 MA0562.1.8 MA0562.1.9 |
| Publications: | Hornitschek P, Kohnen M.V, Lorrain S, Rougemont J, Ljung K, López-Vidriero I, Franco-Zorrilla J.M, Solano R, Trevisan M, Pradervand S, Xenarios I, Fankhauser C. Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling. The Plant journal : for cell and molecular biology 71:699-711 (2012). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.