Transcription Factor
| Accessions: | Q93560 (JASPAR 2024) |
| Names: | BLMP1_CAEEL |
| Organisms: | Caenorhabditis elegans |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q93560 |
| Length: | 817 |
| Pfam Domains: | 508-530 Zinc finger, C2H2 type 508-530 C2H2-type zinc finger 508-523 C2H2-type zinc finger 522-546 Zinc-finger double domain 536-558 Zinc finger, C2H2 type 536-558 C2H2-type zinc finger 550-575 Zinc-finger double domain 563-586 C2H2-type zinc finger 564-586 Zinc finger, C2H2 type 564-586 C2H2-type zinc finger 565-584 Zinc-finger of C2H2 type 578-603 Zinc-finger double domain 591-614 C2H2-type zinc finger 592-614 C2H2-type zinc finger 606-629 Zinc-finger double domain 620-641 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 MGQGSGDDGVPPAPFSSAAAAAHSPPHSPLSVGVSSASSATSSSSTPPSSTSPAGVSASG 60 61 ARNVETDWKQSGDENLAELCIFHVPDKSVSLPNPKRAECTLPMNLILKSSSKNRKKSSIW 120 121 SSDHIPRGVRFGPLVGEIRLVDVDTALVCPAEASMAGGGPAQEDVPFDEAPEEWKIYSPS 180 181 GGRLNKTICVKDDARSNWMKYVAAAEEEDFQNLVAAQIGNDIYFYTVKKIEANTELSFWF 240 241 SRDYARKLNYSTRPYVRVRRPATQLIPSAPPASASTAIASLAETIVAIDYSVKKLIESPI 300 301 DTLSTDASSASDEEMIDVEEQESCTRPVAEVTRPNVIQNPVVRPVATKVNNFPGIPVRLG 360 361 NFYASPLVDFKEFMRKSLQLKLVDTSMFVSPVAQTTAAITATGGRSGQPIDVQPVLAATA 420 421 GAHFGNYAAIYGSQDFQHELSKPLYTSASPAFGGGGGMGGGFGMGGSAHTSSFHQLPFVN 480 481 HSSSSHNDSSFNGVPNYVQQQENGKTRYACKDCNKTFGQLSNLKVHVRTHTGERPFKCEI 540 541 CTKEFTQLAHLQKHHLVHTGERPHRCDICDKRFSSTSNLKTHLRLHNGQKPYTCDVCDAK 600 601 FTQYVHLRLHKRLHANERPYSCGTCGKKYISPSGLRTHWKTTTCKEEDMKDSMRDDLMDI 660 661 KGEIDEGSMSGSGYGNLGIFENTLNSELKRPLMPIETIYSKYNLPNASLLGQGPSGMQEQ 720 721 QAPPPTSQQQQHMMYGNTMGHMGQGSHLQGPPPPPQHFQMDHSGMQNGGGIPHQHQLIQG 780 781 GPSSGSGQQQHPQHNGIHRLPDLKNPLLPSLGLPHYP |
| Interface Residues: | 508, 518, 519, 520, 521, 522, 524, 525, 543, 545, 546, 547, 548, 549, 550, 552, 553, 554, 555, 556, 557, 559, 561, 574, 575, 576, 577, 578, 579, 580, 581, 582, 584, 585, 603, 604, 605, 606, 607, 608, 609, 630, 631, 632, 633, 634, 635, 636, 637 |
| 3D-footprint Homologues: | 2kmk_A, 1tf3_A, 3uk3_C, 6jnm_A, 8cuc_F, 7y3l_A, 5kkq_D, 6u9q_A, 5yel_A, 5ei9_F, 1g2f_F, 6wmi_A, 5k5i_A, 8ssq_A, 1tf6_A, 7w1m_H, 8ssu_A, 5v3j_F, 4x9j_A, 8gn3_A, 1mey_C, 7y3m_I, 6e94_A, 7ysf_A, 2lt7_A, 2i13_A, 1ubd_C, 2gli_A, 7n5w_A, 2wbs_A, 2drp_D, 5und_A, 1llm_D, 6ml4_A, 6blw_A, 8h9h_G, 4m9v_C, 7eyi_G, 6a57_A, 2jpa_A, 1yuj_A, 1f2i_J, 7txc_E, 5kl3_A, 5k5l_F, 5yj3_D |
| Binding Motifs: | MA0537.1 rAAArwGArAr |
| Binding Sites: | MA0537.1.1 MA0537.1.10 MA0537.1.11 MA0537.1.12 MA0537.1.13 MA0537.1.14 MA0537.1.15 MA0537.1.16 MA0537.1.17 MA0537.1.18 MA0537.1.19 MA0537.1.2 MA0537.1.20 MA0537.1.3 MA0537.1.4 MA0537.1.5 MA0537.1.6 MA0537.1.7 MA0537.1.8 MA0537.1.9 |
| Publications: | Doody G.M, Care M.A, Burgoyne N.J, Bradford J.R, Bota M, Bonifer C, Westhead D.R, Tooze R.M. An extended set of PRDM1/BLIMP1 target genes links binding motif type to dynamic repression. Nucleic acids research 38:5336-50 (2010). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.