Transcription Factor
| Accessions: | Q8H1F5 (JASPAR 2024), T02300 (AthalianaCistrome v4_May2016) |
| Names: | IDD7_ARATH, AT1G55110, IDD7, T02300; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:C2H2 |
| Length: | 455 |
| Pfam Domains: | 91-114 Zinc-finger double-stranded RNA-binding 92-114 Zinc finger, C2H2 type 92-114 C2H2-type zinc finger 169-191 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MMMNRDILFHQQQQQQMEENMSNLTSASGDQASVSSGNRTETSGSNINQHHQEQCFVPQS 60 61 SLKRKRNQPGNPDPEAEVMALSPKTLMATNRFICEVCNKGFQRDQNLQLHKRGHNLPWKL 120 121 KQRSNKDVVRKKVYVCPEPGCVHHHPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKKYAV 180 181 QSDWKAHAKTCGTKEYKCDCGTLFSRRDSFITHRAFCDALAEESARAMPNPIMIQASNSP 240 241 HHHHHQTQQNIGFSSSSQNIISNSNLHGPMKQEESQHHYQNIPPWLISSNPNPNGNNGNL 300 301 FPPVASSVNTGRSSFPHPSPAMSATALLQKAAQMGSTKSTTPEEEERSSRSSYNNLITTT 360 361 MAAMMTSPPEPGFGFQDYYMMNHQHHGGGEAFNGGFVPGEEKNDVVDDGGGETRDFLGLR 420 421 SLMSHNEILSFANNLGNCLNTSATEQQQQQHSHQD |
| Interface Residues: | 74, 77, 81, 92, 103, 104, 105, 106, 108, 109, 111, 112, 115, 122, 123, 124, 125, 128, 151, 152, 153, 154, 155, 157, 158, 179, 180, 181, 182, 183, 185, 186, 206, 207, 208, 209, 212 |
| 3D-footprint Homologues: | 8cuc_F, 7y3l_A, 2kmk_A, 5v3j_F, 6u9q_A, 6blw_A, 5ei9_F, 2gli_A, 6e94_A, 2i13_A, 7y3m_I, 6wmi_A, 2jpa_A, 1mey_C, 5kl3_A, 6ml4_A, 1f2i_J, 4x9j_A, 1g2f_F, 2lt7_A, 1ubd_C, 8h9h_G, 7n5w_A, 2drp_D, 7eyi_G, 2wbs_A, 7txc_E |
| Binding Motifs: | M0313 / MA1374.1 mrsAAAAcGACAAAAawa MA1374.2 rsAAAAcGACAAAA |
| Binding Sites: | MA1374.1.1 MA1374.1.10 MA1374.1.11 MA1374.1.12 MA1374.1.13 MA1374.1.14 MA1374.1.15 MA1374.1.16 MA1374.1.17 MA1374.1.18 MA1374.1.19 MA1374.1.2 MA1374.1.20 MA1374.1.3 MA1374.1.4 MA1374.1.5 MA1374.1.6 MA1374.1.7 MA1374.1.8 MA1374.1.9 MA1374.2.1 MA1374.2.10 MA1374.2.11 MA1374.2.12 MA1374.2.13 MA1374.2.14 MA1374.2.15 MA1374.2.16 MA1374.2.17 MA1374.2.18 MA1374.2.19 MA1374.2.2 MA1374.2.20 MA1374.2.3 MA1374.2.4 MA1374.2.5 MA1374.2.6 MA1374.2.7 MA1374.2.8 MA1374.2.9 |
| Publications: | Cui D, Zhao J, Jing Y, Fan M, Liu J, Wang Z, Xin W, Hu Y. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. PLoS Genet : (2013;9(9):e1003759.). [Pubmed] |
| Related annotations: | PaperBLAST |
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