Transcription Factor

Accessions: T151164_1.02 (CISBP 1.02), A2X7K8 (JASPAR 2018)
Names: OsI_08196, T151164_1.02;, A2X7K8_ORYSI
Organisms: Oryza sativa, Oryza sativa Indica Group
Libraries: CISBP 1.02 1, JASPAR 2018 2
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
2 [Pubmed]
Notes: experiment type:PBM, family:TCP
Length: 210
Pfam Domains: 54-147 TCP family transcription factor
Sequence: MSSRDAAATFHVYQPVQIPTATVAPAAAVSAAPAEAVAQLVPAPSKKAAGAAGGKDRHSK
VNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPAILAATGTGTTPAAFVS
SSAPSTSSHQHTLLGKRQRQESAAADAVSVAGAASAFWAALPAPGRPDAWGFSPLDAQPT
YVPMAQAHHHHLNLLAALSGAARRAEEESR
Binding Motifs: M1658_1.02 GGGCCCAC
MA1050.1 GGGCCCAC
Publications: Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). [Pubmed]

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