Transcription Factor
| Accessions: | T098494_1.02 (CISBP 1.02), Q27350 (JASPAR 2024) |
| Names: | so, T098494_1.02;, SO_DROME |
| Organisms: | Drosophila, Drosophila melanogaster |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 416 |
| Pfam Domains: | 224-274 Homeobox domain 239-272 Homeobox KN domain |
| Sequence: (in bold interface residues) | 1 MLQHPATDFYDLAAANAAAVLTARHTPPYSPTGLSGSVALHNNNNNNSSTSNNNNSTLDI 60 61 MAHNGGGAGGGLHLNSSSNGGGGGGVVSGGGSGGRENLPSFGFTQEQVACVCEVLQQAGN 120 121 IERLGRFLWSLPQCDKLQLNESVLKAKAVVAFHRGQYKELYRLLEHHHFSAQNHAKLQAL 180 181 WLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVLRDWYSHN 240 241 PYPSPREKRDLAEATGLTTTQVSNWFKNRRQRDRAAEHKDGSTDKQHLDSSSDSEMEGSM 300 301 LPSQSAQHQQQQQQQQHSPGNSSGNNNGLHQQQLQHVAAEQGLQHHPHQPHPASNIANVA 360 361 ATKSSGGGGGGGVSAAAAAQMQMPPLTAAVAYSHLHSVMGAMPMTAMYDMGEYQHL |
| Interface Residues: | 158, 159, 160, 163, 169, 173, 194, 213, 222, 260, 261, 263, 264, 267, 268, 271, 272, 274, 275 |
| 3D-footprint Homologues: | 1au7_A, 4xrs_G, 4j19_B, 5jlw_D, 2ld5_A, 1ig7_A, 2xsd_C, 1e3o_C, 7q3o_C, 7xrc_C, 1le8_A, 1o4x_A, 4cyc_A, 2d5v_B, 8g87_X, 1le8_B, 6es3_K, 1du0_A, 3l1p_A, 1puf_A, 7psx_B, 1jgg_B, 5zfz_A, 3a01_E, 2h1k_B, 1mnm_C, 6fqp_B, 5flv_I, 3lnq_A, 2lkx_A, 1puf_B, 1k61_B, 5zjt_E, 4qtr_D, 3cmy_A, 2hdd_A, 1nk2_P, 6fqq_E, 1fjl_B, 5hod_A, 3rkq_B, 2r5y_A, 1zq3_P, 6a8r_A, 1b72_A, 4xrm_B, 3d1n_M, 2hos_A, 6m3d_C |
| Binding Motifs: | MA0246.1 TGATAC M1093_1.02 tgATMycyy |
| Binding Sites: | MA0246.1.13 MA0246.1.1 MA0246.1.10 MA0246.1.11 MA0246.1.12 MA0246.1.14 MA0246.1.15 MA0246.1.16 MA0246.1.17 MA0246.1.18 MA0246.1.19 MA0246.1.2 MA0246.1.20 MA0246.1.3 MA0246.1.4 MA0246.1.5 MA0246.1.6 MA0246.1.7 MA0246.1.8 MA0246.1.9 |
| Publications: | Noyes M.B, Meng X, Wakabayashi A, Sinha S, Brodsky M.H, Wolfe S.A. A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system. Nucleic acids research 36:2547-60 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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