Transcription Factor
| Accessions: | Q9FIM4 (JASPAR 2024), T25608 (AthalianaCistrome v4_May2016) |
| Names: | AtMYB119, MY119_ARATH, Myb-related protein 119, Transcription factor MYB119, AT5G58850, MYB119, T25608; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB |
| Length: | 430 |
| Pfam Domains: | 105-151 Myb-like DNA-binding domain 108-166 Myb-like DNA-binding domain 158-199 Myb-like DNA-binding domain 160-207 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MEDRRLVHGAAPPLTAVERFLYGQKNDALCSKKQESSRDQPIVKTKISIETRSDNKENTT 60 61 FGPTREKHLVLNGGNRNPTGEVVARSAARDYQNSTKKRSSKNLIKGQWTAEEDRKLIRLV 120 121 RQHGERKWAMISEKLEGRAGKQCRERWHNHLRPDIKKDGWSEEEERVLVESHMRIGNKWA 180 181 EIAKLIPGRTENSIKNHWNATKRRQNSKRKHKRESNADNNDRDASPSAKRPCILQDYIKS 240 241 IERNNINKDNDEKKNENTISVISTPNLDQIYSDGDSASSILGGPYDEELDYFQNIFANHP 300 301 ISLENLGLSQTSDEVTQSSSSGFMIKNPNPNLHDSVGIHHQEATITAPANTPHLASDIYL 360 361 SYLLNGTTSSYSDTHFPSSSSSTSSTTVEHGGHNEFLEPQANSTSERREMDLIEMLSGSI 420 421 QGSNICFPLV |
| Interface Residues: | 105, 106, 139, 140, 141, 142, 144, 145, 148, 149, 150, 152, 154, 156, 191, 192, 195, 196, 199, 200, 201, 213 |
| 3D-footprint Homologues: | 3osg_A, 1vfc_A, 2kdz_A, 7xur_A, 1w0t_A, 1mse_C, 6kks_A, 3zqc_A, 5eyb_B, 8ity_W, 5n9g_C |
| Binding Motifs: | M0517 / MA1176.1 yrwmCGTTACr M0510 wwwwyGTAACGkwyr MA1176.2 rwmCGTTACr |
| Binding Sites: | MA1176.1.1 MA1176.1.10 MA1176.1.11 MA1176.1.12 MA1176.1.13 MA1176.1.14 MA1176.1.15 MA1176.1.16 MA1176.1.17 MA1176.1.18 MA1176.1.19 MA1176.1.2 MA1176.1.20 MA1176.1.3 MA1176.1.4 MA1176.1.5 MA1176.1.6 MA1176.1.7 / MA1176.1.9 MA1176.1.8 MA1176.2.15 MA1176.2.1 MA1176.2.10 MA1176.2.11 MA1176.2.12 MA1176.2.13 MA1176.2.14 MA1176.2.16 MA1176.2.17 MA1176.2.18 MA1176.2.19 MA1176.2.2 MA1176.2.20 MA1176.2.3 MA1176.2.4 MA1176.2.5 MA1176.2.6 MA1176.2.7 / MA1176.2.9 MA1176.2.8 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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