Transcription Factor
| Accessions: | GT1 (Athamap 20091028), Q9FX53 (JASPAR 2024), T03295 (AthalianaCistrome v4_May2016) |
| Names: | GT1, Trihelix DNA-binding protein GT-1, Trihelix transcription factor GT-1, TGT1_ARATH, AT1G13450, T03295; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | Athamap 20091028 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Uniprot: | Q9FX53 |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:Trihelix |
| Length: | 406 |
| Pfam Domains: | 83-150 Myb/SANT-like DNA-binding domain 86-169 Myb/SANT-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MFISDKSRPTDFYKDDHHNSSTTSTTRDMMIDVLTTTNESVDLQSHHHHNHHNHHLHQSQ 60 61 PQQQILLGESSGEDHEVKAPKKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQIS 120 121 SKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGNGSAKMSYYKEIEDILRERSKKVTP 180 181 PQYNKSPNTPPTSAKVDSFMQFTDKGFDDTSISFGSVEANGRPALNLERRLDHDGHPLAI 240 241 TTAVDAVAANGVTPWNWRETPGNGDDSHGQPFGGRVITVKFGDYTRRIGVDGSAEAIKEV 300 301 IRSAFGLRTRRAFWLEDEDQIIRCLDRDMPLGNYLLRLDDGLAIRVCHYDESNQLPVHSE 360 361 EKIFYTEEDYREFLARQGWSSLQVDGFRNIENMDDLQPGAVYRGVR |
| Interface Residues: | 113, 260, 263, 264 |
| 3D-footprint Homologues: | 2h8r_B, 4z47_A |
| Binding Motifs: | GT1 rwawgGTwAAww MA1020.1 gTTAACCa M0784 mmyTAACYrTrGTTaaawy |
| Binding Sites: | GT1_1 GT1_2 GT1_3 GT1_4 MA1020.1.1 MA1020.1.10 / MA1020.1.12 MA1020.1.11 MA1020.1.13 MA1020.1.14 MA1020.1.15 / MA1020.1.16 MA1020.1.17 / MA1020.1.18 MA1020.1.19 MA1020.1.2 MA1020.1.20 MA1020.1.3 MA1020.1.4 MA1020.1.5 MA1020.1.6 MA1020.1.7 MA1020.1.8 / MA1020.1.9 |
| Publications: | Hiratsuka K., Wu X., Fukuzawa H., Chua N. H. Molecular dissection of GT-1 from Arabidopsis. Plant Cell 6:1805-1813 (1994). [Pubmed] Marechal E., Hiratsuka K., Delgado J., Nairn A., Qin J., Chait B. T., Chua N. H. Modulation of GT-1 DNA-binding activity by calcium-dependent phosphorylation. Plant Mol. Biol. 40:373-386 (1999). [Pubmed] |
| Related annotations: | PaperBLAST |
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