Transcription Factor
| Accessions: | RAV1 (Athamap 20091028), T004628_1.02 (CISBP 1.02), Q9ZWM9 (JASPAR 2024), T00471 (AthalianaCistrome v4_May2016) |
| Names: | RAV1, T004628_1.02;, AP2/ERF and B3 domain-containing transcription factor RAV1, Ethylene-responsive transcription factor RAV1, Protein RELATED TO ABI3/VP1 1, RAV1_ARATH, AT1G13260, T00471; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | Athamap 20091028 1, CISBP 1.02 2, JASPAR 2024 3, AthalianaCistrome v4_May2016 4 1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009). [Pubmed] 2 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 3 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 4 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:AP2,B3, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:RAV |
| Length: | 344 |
| Pfam Domains: | 60-107 AP2 domain 188-291 B3 DNA binding domain |
| Sequence: (in bold interface residues) | 1 MESSSVDESTTSTGSICETPAITPAKKSSVGNLYRMGSGSSVVLDSENGVEAESRKLPSS 60 61 KYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAVHRFRRRDAVTNFKDVKM 120 121 DEDEVDFLNSHSKSEIVDMLRKHTYNEELEQSKRRRNGNGNMTRTLLTSGLSNDGVSTTG 180 181 FRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRF 240 241 RYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDLDAGR 300 301 VLRLFGVNISPESSRNDVVGNKRVNDTEMLSLVCSKKQRIFHAS |
| Interface Residues: | 66, 68, 69, 70, 74, 76, 78, 81, 83, 85, 193, 195, 200, 201, 202, 204, 245, 246, 247, 248, 250 |
| 3D-footprint Homologues: | 1gcc_A, 5wx9_A, 7wq5_A, 7et4_D, 6j9b_A, 6ycq_A, 6j9c_D, 7et6_A, 6sdg_B, 6fas_B |
| Binding Motifs: | MA0582.1 / RAV1(1) mwgCAACAkwwa MA0583.1 / RAV1(2) wtCaCCTGrssy M0077_1.02 wwrcaaCAkw M0078_1.02 dCACCTGAww M0722 mwgrTdwwtTyTGTTGb M0723 tttymagrtdwwtTyTGTTGk MA0582.2 gCAACA |
| Binding Sites: | MA0582.1.1 MA0582.1.10 MA0582.1.11 MA0582.1.12 MA0582.1.13 MA0582.1.14 MA0582.1.15 MA0582.1.16 MA0582.1.17 MA0582.1.18 MA0582.1.19 MA0582.1.2 MA0582.1.20 MA0582.1.3 MA0582.1.4 MA0582.1.5 MA0582.1.6 MA0582.1.7 MA0582.1.8 MA0582.1.9 MA0582.2.9 MA0582.2.19 MA0582.2.1 MA0582.2.10 MA0582.2.11 MA0582.2.12 MA0582.2.13 MA0582.2.14 MA0582.2.15 MA0582.2.16 MA0582.2.17 MA0582.2.18 MA0582.2.2 / MA0582.2.4 MA0582.2.20 MA0582.2.3 MA0582.2.5 MA0582.2.6 / MA0582.2.7 MA0582.2.8 |
| Publications: | Kagaya Y., Ohmiya K., Hattori T. RAV1, a Novel DNA-Binding Protein, Binds to Bipartite Recognition Sequence through Two Distinct DNA-Binding Domains Uniquely Found in Higher Plants. Nucleic Acids Res. 27:470-478 (1999). [Pubmed] |
| Related annotations: | PaperBLAST |
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