Transcription Factor
| Accessions: | AGL1 (Athamap 20091028), P29381 (JASPAR 2024) |
| Names: | AGL1, Agamous-like MADS-box protein AGL1, AGL1_ARATH, Protein SHATTERPROOF 1 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | Athamap 20091028 1, JASPAR 2024 2 1 Bulow L, Engelmann S, Schindler M, Hehl R. AthaMap, integrating transcriptional and post-transcriptional data. Nucleic acids research 37:D983-6 (2009). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 248 |
| Pfam Domains: | 24-73 SRF-type transcription factor (DNA-binding and dimerisation domain) 95-188 K-box region |
| Sequence: (in bold interface residues) | 1 MEEGGSSHDAESSKKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL 60 61 VIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPSVTEANTQYYQQEASKLRRQIRDIQ 120 121 NSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNM 180 181 YLRAKIAEGARLNPDQQESSVIQGTTVYESGVSSHDQSQHYNRNYIPVNLLEPNQQFSGQ 240 241 DQPPLQLV |
| Interface Residues: | 18, 19, 30, 33, 34, 38 |
| 3D-footprint Homologues: | 1n6j_A, 1c7u_A, 7x1n_C, 1hbx_A, 1mnm_A |
| Binding Motifs: | AGL1 / MA0585.1 wtTdCCwwwwtgGGwAar MA0585.2 tTdCCwwwwtgGGwAa |
| Publications: | Huang H., Tudor M., Su T., Zhang Y., Hu Y., Ma H. DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation.. Plant Cell 8:81-94 (1996). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.