Transcription Factor
Accessions: | VAX2 (HT-SELEX2 May2017), Q9UIW0 (JASPAR 2024) |
Names: | ENSG00000116035, VAX2, VAX2_HUMAN |
Organisms: | Homo sapiens |
Libraries: | HT-SELEX2 May2017 1, JASPAR 2024 2 1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Notes: | TF family: Homeodomain experiment: HT-SELEX Hamming distance: 1 cycle: 3, TF family: Homeodomain experiment: Methyl-HT-SELEX Hamming distance: 1 cycle: 3 |
Length: | 290 |
Pfam Domains: | 103-159 Homeobox domain |
Sequence: (in bold interface residues) | 1 MGDGGAERDRGPARRAESGGGGGRCGDRSGAGDLRADGGGHSPTEVAGTSASSPAGSRES 60 61 GADSDGQPGPGEADHCRRILVRDAKGTIREIVLPKGLDLDRPKRTRTSFTAEQLYRLEME 120 121 FQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQSRDLEKRASSSASEAFATS 180 181 NILRLLEQGRLLSVPRAPSLLALTPSLPGLPASHRGTSLGDPRNSSPRLNPLSSASASPP 240 241 LPPPLPAVCFSSAPLLDLPAGYELGSSAFEPYSWLERKVGSASSCKKANT |
Interface Residues: | 103, 104, 105, 106, 144, 145, 147, 148, 151, 152, 155, 156, 159, 168, 171 |
3D-footprint Homologues: | 5zfz_A, 3d1n_M, 1fjl_B, 6a8r_A, 2h1k_B, 1puf_A, 3cmy_A, 6m3d_C, 1nk2_P, 1zq3_P, 3lnq_A, 2lkx_A, 1jgg_B, 2ld5_A, 7q3o_C, 6es3_K, 2hdd_A, 3rkq_B, 2r5y_A, 5flv_I, 2hos_A, 5zjt_E, 4cyc_A, 7psx_B, 1b72_A, 5hod_A, 3l1p_A, 1ig7_A, 3a01_E, 5jlw_D, 4xrs_G, 7xrc_C, 1e3o_C, 1au7_A, 2xsd_C, 1le8_A, 1mnm_C, 1puf_B, 1k61_B, 8g87_X, 1o4x_A, 4qtr_D, 1le8_B, 1du0_A |
Binding Motifs: | MA0723.1 yTAATkAc VAX2_2 sYAATTAs VAX2_methyl_1 sYAATTAs MA0723.2 syaATTAr MA0723.3 yaATTA |
Publications: | Noyes M.B, Christensen R.G, Wakabayashi A, Stormo G.D, Brodsky M.H, Wolfe S.A. Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites. Cell 133:1277-89 (2008). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.