Transcription Factor
| Accessions: | WRKY45 (ArabidopsisPBM 20140210), Q9S763 (JASPAR 2024), T11806 (AthalianaCistrome v4_May2016) |
| Names: | ATWRKY45, WRKY45, AT.I.24-4, Probable WRKY transcription factor 45, WRK45_ARATH, WRKY DNA-binding protein 45, AT3G01970, T11806; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | ArabidopsisPBM 20140210 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | WRKY, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:WRKY |
| Length: | 147 |
| Pfam Domains: | 64-122 WRKY DNA -binding domain |
| Sequence: (in bold interface residues) | 1 MEDRRCDVLFPCSSSVDPRLTEFHGVDNSAQPTTSSEEKPRSKKKKKEREARYAFQTRSQ 60 61 VDILDDGYRWRKYGQKAVKNNPFPRSYYKCTEEGCRVKKQVQRQWGDEGVVVTTYQGVHT 120 121 HAVDKPSDNFHHILTQMHIFPPFCLKE |
| Interface Residues: | 71, 72, 73, 75, 76, 87 |
| 3D-footprint Homologues: | 6j4g_B, 6ir8_A, 6j4e_B, 6j4f_F, 7z0u_A |
| Binding Motifs: | WRKY45 dCGTTGACya MA1087.1 CGTTGACy M0805 ckTTGACTTTtt M0821 aAAAGTCAAmg MA1087.2 waaAAAGTCAAmrww MA1087.3 aAAAGTCAAm |
| Binding Sites: | MA1087.1.1 MA1087.1.10 MA1087.1.11 MA1087.1.12 MA1087.1.13 MA1087.1.14 MA1087.1.15 MA1087.1.16 MA1087.1.17 MA1087.1.18 MA1087.1.19 MA1087.1.2 MA1087.1.20 MA1087.1.3 MA1087.1.4 MA1087.1.5 MA1087.1.6 MA1087.1.7 MA1087.1.8 MA1087.1.9 MA1087.2.1 MA1087.2.10 MA1087.2.11 MA1087.2.12 MA1087.2.13 MA1087.2.14 MA1087.2.15 MA1087.2.16 MA1087.2.17 MA1087.2.18 MA1087.2.19 MA1087.2.2 MA1087.2.20 MA1087.2.3 MA1087.2.4 MA1087.2.5 MA1087.2.6 MA1087.2.7 MA1087.2.8 MA1087.2.9 MA1087.3.1 MA1087.3.10 MA1087.3.11 MA1087.3.12 MA1087.3.13 / MA1087.3.14 / MA1087.3.17 / MA1087.3.18 MA1087.3.15 MA1087.3.16 / MA1087.3.4 / MA1087.3.6 MA1087.3.19 MA1087.3.2 MA1087.3.20 MA1087.3.3 MA1087.3.5 MA1087.3.7 MA1087.3.8 MA1087.3.9 |
| Publications: | Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. [Pubmed] |
| Related annotations: | PaperBLAST |
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