Transcription Factor
| Accessions: | O64647 (JASPAR 2024), T08434 (AthalianaCistrome v4_May2016) |
| Names: | TCP9_ARATH, At2g45680, T08434; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:TCP |
| Length: | 356 |
| Pfam Domains: | 69-161 TCP family transcription factor |
| Sequence: (in bold interface residues) | 1 MATIQKLEEVAGKDQTLRAVDLTIINGVRNVETSRPFQVNPTVSLEPKAEPVMPSFSMSL 60 61 APPSSTGPPLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLE 120 121 NAEPAIIAATGTGTVPAIAMSVNGTLKIPTTTNADSDMGENLMKKKRKRPSNSEYIDISD 180 181 AVSASSGLAPIATTTTIQPPQALASSTVAQQLLPQGMYPMWAIPSNAMIPTVGAFFLIPQ 240 241 IAGPSNQPQLLAFPAAAASPSSYVAAVQQASTMARPPPLQVVPSSGFVSVSDVSGSNLSR 300 301 ATSVMAPSSSSGVTTGSSSSIATTTTHTLRDFSLEIYEKQELHQFMSTTTARSSNH |
| Interface Residues: | 77, 78, 79, 88, 90 |
| 3D-footprint Homologues: | 7vp2_B, 7vp3_D |
| Binding Motifs: | M0761 / MA1285.1 ccattwgyyGTGGGtCCCACm M0758 GTGGGmCCCAc MA1285.2 GTGGGtCCCAC |
| Binding Sites: | MA1285.1.1 / MA1285.1.11 / MA1285.1.14 / MA1285.1.16 / MA1285.1.17 / MA1285.1.18 / MA1285.1.2 / MA1285.1.20 / MA1285.1.5 / MA1285.1.7 / MA1285.1.9 MA1285.1.10 / MA1285.1.12 / MA1285.1.3 / MA1285.1.8 MA1285.1.13 MA1285.1.15 MA1285.1.19 MA1285.1.4 MA1285.1.6 MA1285.2.1 / MA1285.2.15 / MA1285.2.18 / MA1285.2.19 / MA1285.2.2 / MA1285.2.20 MA1285.2.10 / MA1285.2.12 / MA1285.2.13 / MA1285.2.8 MA1285.2.11 / MA1285.2.16 MA1285.2.14 / MA1285.2.9 MA1285.2.17 / MA1285.2.4 / MA1285.2.6 / MA1285.2.7 MA1285.2.3 MA1285.2.5 |
| Publications: | Viola I. L., Uberti Manassero N. G., Ripoll R., Gonzalez D. H. The Arabidopsis class I TCP transcription factor AtTCP11 is a developmental regulator with distinct DNA binding properties due to the presence of threonine at position 15 of the TCP domain.. Biochem. J. 435:143 (2011). [Pubmed] |
| Related annotations: | PaperBLAST |
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