Transcription Factor
| Accessions: | O64645 (JASPAR 2024) |
| Names: | Agamous-like MADS-box protein AGL20, MADS-box protein SOC1, Protein SUPPRESSOR OF CONSTANS OVEREXPRESSION 1, SOC1_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | O64645 |
| Length: | 214 |
| Pfam Domains: | 9-59 SRF-type transcription factor (DNA-binding and dimerisation domain) 77-171 K-box region |
| Sequence: (in bold interface residues) | 1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60 61 NMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCS 120 121 IEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHESEVWS 180 181 NKNQESTGRGDEESSPSSEVETQLFIGLPCSSRK |
| Interface Residues: | 3, 4, 15, 18, 19, 23, 99, 102, 103, 107 |
| 3D-footprint Homologues: | 1c7u_A, 1hbx_A, 7x1n_C, 1n6j_A, 1mnm_A, 5t01_B |
| Binding Motifs: | MA0554.1 wyTTTCYwTTTTTGG MA0554.2 TTTCYwTTTTTGG |
| Binding Sites: | MA0554.1.1 / MA0554.1.11 / MA0554.1.6 MA0554.1.10 / MA0554.1.14 / MA0554.1.2 / MA0554.1.5 / MA0554.1.8 MA0554.1.12 MA0554.1.13 MA0554.1.15 / MA0554.1.3 MA0554.1.16 MA0554.1.17 MA0554.1.18 MA0554.1.19 MA0554.1.20 MA0554.1.4 / MA0554.1.7 MA0554.1.9 MA0554.2.1 / MA0554.2.11 / MA0554.2.13 / MA0554.2.15 / MA0554.2.3 / MA0554.2.6 / MA0554.2.9 MA0554.2.10 / MA0554.2.12 / MA0554.2.14 / MA0554.2.2 / MA0554.2.8 MA0554.2.16 MA0554.2.17 MA0554.2.18 MA0554.2.19 / MA0554.2.4 / MA0554.2.7 MA0554.2.20 MA0554.2.5 |
| Publications: | Riechmann J. L., Wang M., Meyerowitz E. M. DNA-binding properties of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA and AGAMOUS. Nucleic Acids Res. 24:3134-3141 (1996). [Pubmed] |
| Related annotations: | PaperBLAST |
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