Transcription Factor
| Accessions: | T19595 (AthalianaCistrome v4_May2016) |
| Names: | 3XHMGBOX1, AT4G11080, T19595; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:HMG |
| Length: | 446 |
| Pfam Domains: | 129-191 HMG (high mobility group) box 130-189 Domain of unknown function (DUF1898) 243-308 Domain of unknown function (DUF1898) 246-312 HMG (high mobility group) box 369-435 Domain of unknown function (DUF1898) 372-440 HMG (high mobility group) box |
| Sequence: (in bold interface residues) | 1 MSTVSSDPAHAKKSRNSRKALKQKNEIVESSPVSDKGKETKSFEKDLMEMQAMLEKMKIE 60 61 KEKTEDLLKEKDEILRKKEVEQEKLKTELKKLQKMKEFKPNMTFAFSQSLAQTEEEKKGK 120 121 KKKKDCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEKKPYEE 180 181 KYQADKEAYLQVITKEKREREAMKLLDDEQKQKTAMELLDQYLHFVQEAEHDNKKKAKKI 240 241 KDPLKPKQPISAYLIYANERRAALKGENKSVIEVAKMAGEEWKNLSEEKKAPYDQMAKKN 300 301 KEIYLQEMEGYKRTKEEEAMSQKKEEEEFMKLHKQEALQLLKKKEKTDNIIKKTKETAKN 360 361 KKKNENVDPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEKQV 420 421 YNSKAAELMEAYKKEVEEYNKTKTSS |
| Interface Residues: | 131, 134, 136, 137, 140, 144, 155, 156, 157, 160, 235, 238, 242, 248, 251, 253, 254, 257, 261, 269, 270, 271, 272, 275, 352, 354, 356, 359, 374, 377, 379, 380, 383, 387, 398, 399, 400, 403 |
| 3D-footprint Homologues: | 4y60_C, 3u2b_C, 3f27_D, 3tmm_A, 3tq6_B, 2gzk_A, 1j5n_A, 2lef_A, 1o4x_B, 1qrv_A, 1hry_A, 1ckt_A, 7zie_A, 6jrp_D, 7m5w_A, 4s2q_D |
| Binding Motifs: | M0424 rCGGCGGhGrwgrmggcrrwg M0425 wCCaCCaCCrCCwCC |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.