Transcription Factor
| Accessions: | ANAC55 (ArabidopsisPBM 20140210), Q9LDY8 (JASPAR 2024), T14398 (AthalianaCistrome v4_May2016) |
| Names: | ANAC055, ATNAC3, NAC domain-containing protein 3, NAC domain-containing protein 55, NAC55_ARATH, AT3G15500, T14398; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | ArabidopsisPBM 20140210 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | NAC, ecotype:Col-0, experiment type: DAP-seq, family:NAC |
| Length: | 317 |
| Pfam Domains: | 14-139 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MGLQELDPLAQLSLPPGFRFYPTDEELMVEYLCRKAAGHDFSLQLIAEIDLYKFDPWVLP 60 61 SKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVISTEGRRVGIKKALVFY 120 121 IGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQTSAQKQAYNNLMTSGRE 180 181 YSNNGSSTSSSSHQYDDVLESLHEIDNRSLGFAAGSSNALPHSHRPVLTNHKTGFQGLAR 240 241 EPSFDWANLIGQNSVPELGLSHNVPSIRYGDGGTQQQTEGIPRFNNNSDVSANQGFSVDP 300 301 VNGFGYSGQQSSGFGFI |
| Interface Residues: | 13, 14, 15, 16, 18, 19, 80, 85, 87, 96, 98, 100, 120, 124, 125, 126, 129 |
| 3D-footprint Homologues: | 7amn_A, 7xp3_B, 3swp_A |
| Binding Motifs: | ANAC55 wACACGTAAy ANAC55_2 rwTACGTAwy MA0937.1 ACACGTAA M0661 wktcdwrtwhwwYACGkmWyy |
| Binding Sites: | MA0937.1.1 MA0937.1.10 MA0937.1.11 MA0937.1.12 MA0937.1.13 MA0937.1.14 MA0937.1.15 MA0937.1.16 MA0937.1.17 MA0937.1.18 MA0937.1.19 MA0937.1.2 MA0937.1.20 MA0937.1.3 MA0937.1.4 MA0937.1.5 MA0937.1.6 MA0937.1.7 MA0937.1.8 MA0937.1.9 |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.