Transcription Factor

Accessions: LBD16 (ArabidopsisPBM 20140210), T07310 (AthalianaCistrome v4_May2016)
Names: ASL18, LBD16, AT2G42430, T07310;
Organisms: Arabidopsis thaliana
Libraries: ArabidopsisPBM 20140210 1, AthalianaCistrome v4_May2016 2
1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: LOB/AS2, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:LOB-AS2
Length: 245
Pfam Domains: 15-115 Protein of unknown function DUF260
Sequence:
(in bold interface residues)
1 MASSGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKL 60
61 LLNVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQ 120
121 TSAAGDLRHSSESTNQFMTWQQTSVSPIGSAYSTPYNHHQPYYGHVNPNNPVSPQSSLEE 180
181 SFSNTSSDVTTTANVRETHHQTGGGVYGHDGIGFHEGYPNKKRSVSYCSSDLGELQALAL 240
241 RMMKN
Interface Residues: 69
3D-footprint Homologues: 4l18_E, 3wts_A, 4l0y_A
Binding Motifs: LBD16 wyCCGGrrww
M0469 sCggaTTTTccGSmrr
M0476 cCggAAAwtccGGmr
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.