Transcription Factor
| Accessions: | T061563_1.02 (CISBP 1.02), Q12132 (JASPAR 2024) |
| Names: | T061563_1.02;, USV1, Nutrient and stress factor 1, Up in starvation protein 1, USV1_YEAST |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 391 |
| Pfam Domains: | 41-66 C2H2-type zinc finger 41-66 Zinc finger, C2H2 type 58-82 Zinc-finger double domain 72-95 C2H2-type zinc finger 72-95 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 MENTTNRNTAGVLTSSNGNFATNSVAASTPKRSKSARRKTFKCTGYDGCTMSFTRAEHLA 60 61 RHIRKHTGEKPFQCPACLKFFSRVDNLKQHRESVHAHKNHHSTSSHQRKPSSSSLSSSSS 120 121 ASSSSSASSSTSYSDPYRKTNINSGNMPMMAENEKAPQIIHSSPEFITSTRSIPPISPRS 180 181 IYNTQRQQQHQQQQHQQAPYYFPSHPITDSYYQYPLPSNNNTINYLPSVDVQYPLNVSPS 240 241 STSHPASEVIISSFPPRSMPSTSFKYKDSADFQARTTMNKYNIRPSNINVNTSNINNHLD 300 301 SFSPPFSPSTTVAEAKPIILPQYQQAFSQPPNGNKNNNMSSSKNGGKGGENFKNTDDRND 360 361 NNNKKRSETLSESDISVNTNKKRLSVDYILT |
| Interface Residues: | 32, 33, 34, 35, 38, 52, 54, 55, 56, 57, 58, 60, 61, 62, 69, 82, 83, 84, 85, 86, 87, 88, 89, 90, 93, 108 |
| 3D-footprint Homologues: | 7ysf_A, 8ssu_A, 5kkq_D, 8ssq_A, 7w1m_H, 5und_A, 3uk3_C, 8cuc_F, 2kmk_A, 7y3l_A, 2drp_D, 1g2f_F, 7eyi_G, 6a57_A, 6ml4_A, 5v3j_F, 2gli_A, 1llm_D, 7n5w_A, 6blw_A, 2lt7_A, 1ubd_C, 6u9q_A, 5yel_A, 4x9j_A, 2i13_A, 8h9h_G, 1mey_C, 7txc_E, 5kl3_A, 2wbs_A, 1f2i_J, 5ei9_F, 2jpa_A, 6jnm_A, 4m9v_C, 1tf6_A, 7y3m_I, 6e94_A, 6wmi_A, 1tf3_A, 5k5i_A, 8gn3_A, 1yuj_A, 5yj3_D |
| Binding Motifs: | MA0413.1 dwwttmCCCCTGAAyttkks M0538_1.02 tMAGGGGc MA0413.2 tmCCCCTGAA |
| Publications: | Newburger D.E, Bulyk M.L. UniPROBE: an online database of protein binding microarray data on protein-DNA interactions. Nucleic acids research 37:D77-82 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
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