Transcription Factor
| Accessions: | ZNF200 (humanC2H2ZF-ChIP Feb2015) |
| Names: | ENSG00000010539, P98182, ZNF200 |
| Organisms: | Homo sapiens |
| Libraries: | humanC2H2ZF-ChIP Feb2015 1 1 Najafabadi HS, Mnaimneh S, Schmitges FW, Garton M, Lam KN, Yang A, Albu M, Weirauch MT, Radovani E, Kim PM, Greenblatt J, Frey BJ, Hughes TR. C2H2 zinc finger proteins greatly expand the human regulatory lexicon. Nat Biotechnol 33:555-62 (2015). [Pubmed] |
| Notes: | TF family: C2H2 experiment: ChIP-seq/MEME/B1H-RC |
| Length: | 395 |
| Pfam Domains: | 252-274 C2H2-type zinc finger 252-274 Zinc finger, C2H2 type 252-274 C2H2-type zinc finger 269-291 Zinc-finger double domain 280-298 C2H2-type zinc finger 280-302 C2H2-type zinc finger 280-302 Zinc finger, C2H2 type 294-318 Zinc-finger double domain 308-318 C2H2-type zinc finger 308-327 C2H2-type zinc finger 324-345 Zinc-finger double domain 335-358 C2H2-type zinc finger 336-358 Zinc finger, C2H2 type 336-358 C2H2-type zinc finger 353-374 Zinc-finger double domain 364-378 C2H2-type zinc finger 366-386 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MMAAKVVPMPPKPKQSFILRVPPDSKLGQDLLRDATNGPKTIHQLVLEHFLTFLPKPSLV 60 61 QPSQKVKETLVIMKDVSSSLQNRVHPRPLVKLLPKGVQKEQETVSLYLKANPEELVVFED 120 121 LNVFHCQEECVSLDPTQQLTSEKEDDSSVGEMMLLAVNGSNPEGEDPEREPVENEDYREK 180 181 SSDDDEMDSSLVSQQPPDNQEKERLNTSIPQKRKMRNLLVTIENDTPLEELSKYVDISII 240 241 ALTRNRRTRRWYTCPLCGKQFNESSYLISHQRTHTGEKPYDCNHCGKSFNHKTNLNKHER 300 301 IHTGEKPYSCSQCGKNFRQNSHRSRHEGIHIREKIFKCPECGKTFPKNEEFVLHLQSHEA 360 361 ERPYGCKKCGRRFGRLSNCTRHEKTHSACKTRKQK |
| Interface Residues: | 236, 238, 239, 241, 242, 244, 248, 252, 262, 263, 264, 265, 266, 268, 269, 271, 272, 275, 289, 290, 291, 292, 293, 294, 296, 297, 298, 301, 318, 319, 320, 321, 322, 323, 324, 325, 326, 346, 347, 348, 349, 350, 353, 375, 376, 377, 378, 381 |
| 3D-footprint Homologues: | 5v3j_F, 5kkq_D, 8ssu_A, 2kmk_A, 7y3l_A, 7n5w_A, 3uk3_C, 1tf3_A, 6jnm_A, 8cuc_F, 6blw_A, 1ubd_C, 6ml4_A, 5ei9_F, 1mey_C, 5kl3_A, 2drp_D, 1f2i_J, 6u9q_A, 5und_A, 2gli_A, 1g2f_F, 1tf6_A, 4x9j_A, 8h9h_G, 7eyi_G, 7y3m_I, 6e94_A, 6wmi_A, 2i13_A, 6a57_A, 2jpa_A, 7w1m_H, 2wbs_A, 5yel_A, 8gn3_A, 5k5i_A, 7txc_E, 8ssq_A, 1llm_D, 4m9v_C, 7ysf_A, 2lt7_A, 5yj3_D, 6dta_B, 5k5l_F |
| Binding Motifs: | ZNF200_ChIP AyTTCC |
| Related annotations: | PaperBLAST |
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