Transcription Factor

Accessions: T100375_1.02 (CISBP 1.02)
Names: a2-1, T100375_1.02;
Organisms: Coprinopsis scobicola
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Homeodomain
Length: 545
Pfam Domains: 149-204 Homeobox domain
169-201 Homeobox KN domain
Sequence:
(in bold interface residues)
1 MHASSENDLWRSIRSASRLILNTNSNRPVTRSQASAHKFVPPVLELTIPKNILPVPHPEH 60
61 LSQATILSVTDRVKRGLEDLRRVHLDNYEQTCKRYIKANQATLATEPARHFRLLQAVCAK 120
121 QRTTFQSKVAQIQADCLAKCHQAMPRQESKRTPFNAEYTPLLEKYFEYNAYPSVRDRERL 180
181 ARKSMMTPRQIEVWFQNHRSRAKKEGRPLQKPSVNSLPLDFSLDSLEETMAPLLLKQRQP 240
241 SVERLPTPPPEQVAGPSRQRSVGPVASPPQVVVGHDHPIQCRSMCTSVLDSTFSPPHAYP 300
301 TIFAEAVQHEASAFPCKSGVYSFPPPCWAPRAKVLPRKECSISDLCDGVKMLHITGPSDA 360
361 SRTPGHQPWFASRCIGRIVAPHCSLIQPASAPTPTPPRRTTSVTTRPSPSPTSRRRRRDS 420
421 LSSPDLNPSSKRRRLDSSYEDELRLPSALRTKSLSRMSSCSSLSSRGSWSELDTPETSPQ 480
481 MSSLISLPAVAGMDDFLPSFTRPRSPSASQYSLVTPFDAYASLPKTLLGDFSLPSRPASL 540
541 ITASQ
Interface Residues: 147, 148, 149, 150, 151, 189, 190, 192, 193, 196, 197, 200, 201, 204
3D-footprint Homologues: 4j19_B, 1fjl_B, 3cmy_A, 3d1n_M, 5zfz_A, 2lkx_A, 1nk2_P, 2ld5_A, 5zjt_E, 2h1k_B, 1b72_A, 5hod_A, 3rkq_B, 1puf_A, 1ig7_A, 6a8r_A, 2hdd_A, 6m3d_C, 5jlw_D, 4cyc_A, 2r5y_A, 1puf_B, 1jgg_B, 4xrs_G, 3l1p_A, 2hos_A, 7psx_B, 3a01_E, 1au7_A, 5flv_I, 3lnq_A, 7q3o_C, 1le8_A, 1e3o_C, 1o4x_A, 4qtr_D, 6fqq_E, 4xrm_B, 1mnm_C, 1du0_A, 6es3_K, 1zq3_P, 1k61_B, 6fqp_B
Binding Motifs: M1181_1.02 acCAATCrr
Related annotations: PaperBLAST

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