Transcription Factor

Accessions: AtMYB115 (AthaMYB 1.0)
Names: AtMYB115, Myb domain protein 115, Myb family transcription factor
Organisms: Arabidopsis thaliana
Libraries: AthaMYB 1.0 1
1 Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]
Uniprot: Q1PDP9
Length: 360
Pfam Domains: 158-204 Myb-like DNA-binding domain
161-221 Myb-like DNA-binding domain
210-252 Myb-like DNA-binding domain
213-255 Myb-like DNA-binding domain
Sequence:
(in bold interface residues)
1 MYHQNLISSTPNQNSNPHDWDIQNPLFSIHPSAEIPSKYPFMGITSCPNTNVFEEFQYKI 60
61 TNDQNFPTTYNTPFPVISEGISYNMHDVQENTMCGYTAHNQGLIIGCHEPVLVHAVVESQ 120
121 QFNVPQSEDINLVSQSERVTEDKVMFKTDHKKKDIIGKGQWTPTEDELLVRMVKSKGTKN 180
181 WTSIAKMFQGRVGKQCRERWHNHLRPNIKKNDWSEEEDQILIEVHKIVGNKWTEIAKRLP 240
241 GRSENIVKNHWNATKRRLHSVRTKRSDAFSPRNNALENYIRSITINNNALMNREVDSITA 300
301 NSEIDSTRCENIVDEVMNLNLHATTSVYVPEQAVLTWGYDFTKCYEPMDDTWMLMNGWN* 360
Interface Residues: 158, 192, 193, 194, 195, 197, 198, 201, 202, 203, 205, 207, 244, 245, 248, 249, 252, 253, 254
3D-footprint Homologues: 3osg_A, 1vfc_A, 2kdz_A, 7xur_A, 6kks_A, 1mse_C, 3zqc_A, 5eyb_B, 8ity_W
Binding Motifs: AtMYB115_II GTTAGTTA
AtMYB115_I kwCwGTTr
Binding Sites: GTTAGTTA
GTCAGTTA
TACTGTTG
Publications: Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.