Transcription Factor

Accessions: Q8VIB5 (JASPAR 2024)
Names: Bar-class homeodomain protein MBH1, BarH-like 2 homeobox protein, BARH2_MOUSE, Homeobox protein B-H1
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 384
Pfam Domains: 230-286 Homeobox domain
Sequence:
(in bold interface residues)
1 MTAMEGASGSSFGIDTILSGAGSGSPGMMNGDFRSLGEARTTDFRSQATPSPCSEIDTVG 60
61 TAPSSPISVTLEPPEPHLVTDGPQHHHHLHHSQQPPPPSAVPAQSLQPSPQQQPPPQPQS 120
121 AAQQLGSAAAAPRTSTSSFLIKDILGDSKPLAACAPYSTSVSSPHHTPKQESNAAHESFR 180
181 PKLEQEDGKTKLDKREDPQSDIKCHGTKEEGDREITSSRESPPVRAKKPRKARTAFSDHQ 240
241 LNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGN 300
301 YSALQRMFPSPYFYHPSLLGSMDSTTAAAAAAAMYSSMYRTPPAPHPQLQRPLVPRVLIH 360
361 GLGPGGQPALNPLSNPIPGTPHPR
Interface Residues: 230, 231, 232, 233, 234, 271, 272, 274, 275, 278, 279, 282, 283, 286, 305
3D-footprint Homologues: 1puf_B, 3d1n_M, 5zfz_A, 1fjl_B, 2h1k_B, 5hod_A, 1puf_A, 1ig7_A, 6a8r_A, 3cmy_A, 1jgg_B, 1nk2_P, 1zq3_P, 6m3d_C, 3lnq_A, 2lkx_A, 1mnm_C, 6es3_K, 2ld5_A, 7q3o_C, 3rkq_B, 2r5y_A, 4xrs_G, 2hos_A, 4cyc_A, 1au7_A, 5flv_I, 3l1p_A, 5zjt_E, 4j19_B, 3a01_E, 7psx_B, 1b72_A, 2hdd_A, 5jlw_D, 7xrc_C, 1e3o_C, 2xsd_C, 1le8_A, 1k61_B, 1o4x_A, 4qtr_D, 1du0_A
Binding Motifs: PH0006.1 aamAAcCAATTAAswh
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]
Related annotations: PaperBLAST

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