Transcription Factor

Accessions: HXA10_HUMAN (HOCOMOCO 10), P31260 (JASPAR 2024)
Names: Homeobox protein Hox-1.8, Homeobox protein Hox-1H, Homeobox protein Hox-A10, HXA10_HUMAN, PL
Organisms: Homo sapiens
Libraries: HOCOMOCO 10 1, JASPAR 2024 2
1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: P31260
Length: 410
Pfam Domains: 337-393 Homeobox domain
Sequence:
(in bold interface residues)
1 MSARKGYLLPSPNYPTTMSCSESPAANSFLVDSLISSGRGEAGGGGGGAGGGGGGGYYAH 60
61 GGVYLPPAADLPYGLQSCGLFPTLGGKRNEAASPGSGGGGGGLGPGAHGYGPSPIDLWLD 120
121 APRSCRMEPPDGPPPPPQQQPPPPPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPK 180
181 VSATAAELAPFPRGPPPDGCALGTSSGVPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGP 240
241 FPAQPPGRGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAE 300
301 ELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMY 360
361 LTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS
Interface Residues: 337, 338, 339, 340, 378, 379, 381, 382, 385, 386, 389, 390, 393
3D-footprint Homologues: 6a8r_A, 6m3d_C, 1fjl_B, 2h1k_B, 5zfz_A, 1puf_A, 1ig7_A, 3cmy_A, 1jgg_B, 1nk2_P, 1zq3_P, 3lnq_A, 2lkx_A, 2ld5_A, 6es3_K, 7q3o_C, 4cyc_A, 2r5y_A, 1puf_B, 5hod_A, 2hos_A, 1au7_A, 5jlw_D, 4xrs_G, 3a01_E, 7psx_B, 1b72_A, 3rkq_B, 5flv_I, 2hdd_A, 5zjt_E, 7xrc_C, 1e3o_C, 2xsd_C, 1le8_A, 6fqq_E, 3d1n_M, 4qtr_D, 1k61_B, 1o4x_A, 6fqp_B, 1mnm_C, 1du0_A
Binding Motifs: MA0899.1 rgymATWAAaa
HXA10_HUMAN.H10MO.C|M01234 kayrrTTTATGw
MA0899.2 gymATWAAa
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]
Related annotations: PaperBLAST

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