Transcription Factor
| Accessions: | Q9SL70 (JASPAR 2024) |
| Names: | AtTCX6, Protein tesmin/TSO1-like CXC 6, TCX6_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 571 |
| Pfam Domains: | 116-156 Tesmin/TSO1-like CXC domain 201-240 Tesmin/TSO1-like CXC domain |
| Sequence: (in bold interface residues) | 1 MGEGEEGDKFPPKTDEVTQESMKSARQLDFTGGSSDVEHSHSNQASSMAAASIPSPIVTV 60 61 TRPIITSQAPPTVATPIPPPPQSQGIILHVPIRHPRPESPNSMPRPAGETRDGTPQKKKQ 120 121 CNCKHSRCLKLYCECFASGTYCDGCNCVNCFNNVENEPARRQAVESTLERNPNAFRPKIA 180 181 ASPHGGRDNREEVGDVVMLARHNKGCHCKKSGCLKKYCECFQANILCSENCKCLDCKNFE 240 241 GSEVRQSLFHGEHSHNLAYLQHANAAITGAIGSSGFASAPPPKRRKGQEIFFNQGTKDSS 300 301 THRLGQANNGRTTSSQTGSRAGGNASLGPSKVVYKSLLANIIKPMDVKALCSVLVAVAGE 360 361 AAKTLTEKRLANQKETSVASSVQDQGHVNNKAEKSGLEDSNADGSKGRSLSPETLALMCD 420 421 ERDTMLMVAASPNCSVEPTSQLPNGQDQVYAEQEKVVLTKFRDCLNRIISCGEVKESNCS 480 481 MSRMDLDTPVQTTVRIDPVVQQAPVANGVSQTAKQPSQLNTTTPNTSSQTANGVSQTAKQ 540 541 PSQLTTTTTTPNTSSQTHLHKTPALSEKKDL |
| Interface Residues: | 132, 217, 301, 320, 321, 322, 323, 325, 326 |
| 3D-footprint Homologues: | 5fd3_A, 6gy3_A |
| Binding Motifs: | MA1380.1 wTTTrAATwTTtwAW |
| Binding Sites: | MA1380.1.20 MA1380.1.9 MA1380.1.1 MA1380.1.10 MA1380.1.11 MA1380.1.12 MA1380.1.13 MA1380.1.14 MA1380.1.15 MA1380.1.16 MA1380.1.17 MA1380.1.18 MA1380.1.19 MA1380.1.2 MA1380.1.3 MA1380.1.4 / MA1380.1.5 MA1380.1.6 MA1380.1.7 MA1380.1.8 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.