Transcription Factor
| Accessions: | Q9VEZ8 (JASPAR 2024) |
| Names: | Pannier, isoform B, Pannier, isoform D, Q9VEZ8_DROME, RE17974p |
| Organisms: | Drosophila melanogaster |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q9VEZ8 |
| Length: | 488 |
| Pfam Domains: | 117-150 GATA zinc finger 174-207 GATA zinc finger |
| Sequence: (in bold interface residues) | 1 MYHSSAVAAYTDLAAAGSAASAGVGVGVSGYHQQAVNAPVYVPSNRQYNHVAAHFGSAAA 60 61 QNAWTTEGFGSAHAQFYSPNAAVMMGSWRSAYDPSGFQRSSPYESAMDFQFGEGRECVNC 120 121 GAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLIKPSKRLVSATATRRMGLCCTNCGTR 180 181 TTTLWRRNNDGEPVCNACGLYYKLHGVNRPLAMRKDGIQTRKRKPKKTGSGSAVGAGTGS 240 241 GTGSTLEAIKECKEEHDLKPSLSLERHSLSKLHTDMKSGTSSSSTLMGHHSAQQQQQQQQ 300 301 QQQQQQQQQQQQSAHQQCFPLYGQTTTQQQHQQHGHSMTSSSGQAHLSARHLHGAAGTQL 360 361 YTPGSSSGGGSASAYTSHSAETPALSNGTPSPHYQHHHHLGGTHGHHVTAAAAHHHFHAA 420 421 AAVAAYGVKTEASATNYDYVNNCYFGGTFGALGGAATTTAMAGGAASELAGYHHQHNVIQ 480 481 AAKLMATS |
| Interface Residues: | 126, 127, 129, 139, 143, 166, 183, 184, 186, 196, 200, 201, 204, 221, 223, 224 |
| 3D-footprint Homologues: | 3vd6_C, 4hc9_A, 1gat_A, 3dfx_B, 4gat_A |
| Binding Motifs: | MA0536.1 TATCGATagyy MA0536.2 TATCGATag |
| Binding Sites: | MA0536.1.1 MA0536.1.10 MA0536.1.11 MA0536.1.12 MA0536.1.13 MA0536.1.14 MA0536.1.15 MA0536.1.16 MA0536.1.17 MA0536.1.18 MA0536.1.19 MA0536.1.2 MA0536.1.20 MA0536.1.3 MA0536.1.4 MA0536.1.5 MA0536.1.6 MA0536.1.7 MA0536.1.8 MA0536.1.9 MA0536.2.1 MA0536.2.10 MA0536.2.11 MA0536.2.12 MA0536.2.13 MA0536.2.14 MA0536.2.15 MA0536.2.16 MA0536.2.17 MA0536.2.18 MA0536.2.19 MA0536.2.2 MA0536.2.20 MA0536.2.3 MA0536.2.4 MA0536.2.5 MA0536.2.6 MA0536.2.7 MA0536.2.8 MA0536.2.9 |
| Publications: | Haenlin M, Cubadda Y, Blondeau F, Heitzler P, Lutz Y, Simpson P, Ramain P. Transcriptional activity of pannier is regulated negatively by heterodimerization of the GATA DNA-binding domain with a cofactor encoded by the u-shaped gene of Drosophila. Genes & development 11:3096-108 (1997). [Pubmed] |
| Related annotations: | PaperBLAST |
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