Transcription Factor

						

			
Accessions: P41936 (JASPAR 2024)

			
Names: HM22_CAEEL
Organisms: Caenorhabditis elegans
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 346
Pfam Domains:   190-246 Homeobox domain
Sequence: 
(in bold interface residues)		   1 MFNVSALRAATPSIASVSSVASPSEQHGLSTSVGVGVNDTTSRTGDGGAASSASSASAAP   60
  61 QQQSQSALHNKLEAKWDTLLPTDTNLQCSTWPDSIPLLAGYSATPTFSFDPCTYGSYDPS  120
 121 AYFASNGIAGSMYTLPDQFPRSENDMLDNSNTSNGNKSDKDGIKLEDEDEILEDEENDEE  180
 181 DDGTGKRKKRKRRVLFTKAQTYELERRFRSQKYLSAPEREALAMQIRLTPTQVKIWFQNH  240
 241 RYKTKKSHTDKPINAALLTTMPNAFSSQSTAASFPTRAMPIPMLVRDSSARSSDISSTSP  300
 301 YTVAFGSANSGYLPTPSAYLPATSGYFSNGPSAASSYMTNTQWWPS
Interface Residues: 190, 191, 192, 193, 195, 231, 232, 234, 235, 238, 239, 242, 243, 246
3D-footprint Homologues: 3cmy_A, 3d1n_M, 6a8r_A, 1fjl_B, 2h1k_B, 5zfz_A, 1puf_A, 1ig7_A, 1jgg_B, 1nk2_P, 1zq3_P, 3lnq_A, 2lkx_A, 6m3d_C, 1mnm_C, 7q3o_C, 2ld5_A, 6es3_K, 5flv_I, 2hdd_A, 1b72_A, 5zjt_E, 4cyc_A, 2r5y_A, 1puf_B, 7psx_B, 2hos_A, 5jlw_D, 4xrs_G, 3a01_E, 1au7_A, 3rkq_B, 2xsd_C, 1le8_A, 7xrc_C, 8g87_X, 5hod_A, 1du0_A, 4qtr_D, 1k61_B, 1o4x_A
Binding Motifs: MA0264.1 rCCACTTsAma
MA0264.2 CCACTTsAm
			
Publications: Berger M.F, Philippakis A.A, Qureshi A.M, He F.S, Estep P.W, Bulyk M.L. Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities. Nature biotechnology 24:1429-35 (2006). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.