Transcription Factor
Accessions: | Q9SCQ6 (JASPAR 2024), T12820 (AthalianaCistrome v4_May2016) |
Names: | IDD2_ARATH, Protein indeterminate-domain 2, Zinc finger protein GAI-ASSOCIATED FACTOR 1, AT3G50700, IDD2, T12820; |
Organisms: | Arabidopsis thaliana |
Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:C2H2 |
Length: | 452 |
Pfam Domains: | 62-85 Zinc-finger double-stranded RNA-binding |
Sequence: (in bold interface residues) | 1 MPVDLDNSSTVSGEASVSISSTGNQNPLPNSTGKKKRNLPGMPDPESEVIALSPKTLLAT 60 61 NRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQKSNKEVKKKVYVCPEVSCVHHDPSRAL 120 121 GDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSF 180 181 ITHRAFCDALAEENARSHHSQSKKQNPEILTRKNPVPNPVPAPVDTESAKIKSSSTLTIK 240 241 QSESPKTPPEIVQEAPKPTSLNVVTSNGVFAGLFESSSASPSIYTTSSSSKSLFASSSSI 300 301 EPISLGLSTSHGSSFLGSNRFHAQPAMSATALLQKAAQMGAASSGGSLLHGLGIVSSTST 360 361 SIDAIVPHGLGLGLPCGGESSSGLKELMMGNSSVFGPKQTTLDFLGLGRAVGNGNGPSNG 420 421 LSTLVGGGTGIDMATTFGSGEFSGKDISRRKS |
Interface Residues: | 48, 52, 56, 73, 74, 75, 76, 77, 79, 80, 86, 87, 89, 90, 93, 95, 96, 99, 113, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 127, 128, 149, 150, 151, 152, 153, 154, 155, 156, 176, 177, 178, 179, 182, 183, 184, 190, 208, 209, 212 |
3D-footprint Homologues: | 8cuc_F, 6wmi_A, 7n5w_A, 1f2i_J, 5ei9_F, 2gli_A, 5v3j_F, 6u9q_A, 2i13_A, 6blw_A, 2wbs_A, 5kkq_D, 4x9j_A, 7eyi_G, 8h9h_G, 7y3m_I, 6e94_A, 2jpa_A, 1tf3_A, 1tf6_A, 5kl3_A, 6ml4_A, 1g2f_F, 5k5i_A, 1mey_C, 2lt7_A, 1ubd_C, 2kmk_A, 2drp_D, 1llm_D, 7txc_E |
Binding Motifs: | M0337 / MA1373.1 hRswAAAMGACAAAA M0320 twwTTTTGTCkTtTtstk |
Publications: | Cui D, Zhao J, Jing Y, Fan M, Liu J, Wang Z, Xin W, Hu Y. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. PLoS Genet : (2013;9(9):e1003759.). [Pubmed] |
Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.