Transcription Factor
| Accessions: | T116900_1.02 (CISBP 1.02), Q9SN12 (JASPAR 2024), T13496 (AthalianaCistrome v4_May2016) |
| Names: | AtMYB77, T116900_1.02;, AT3g50060/F3A4_140, AtMYBR2, Myb domain protein 77, MYB transcription factor, Myb-related protein 77, Myb-related protein R2, MYB77_ARATH, Q9SN12_ARATH, R2R3-MYB transcription factor, Transcription factor MYB77, AT3G50060, MYB77, T13496; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Uniprot: | Q9SN12 |
| Notes: | experiment type:PBM, family:Myb/SANT, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB |
| Length: | 301 |
| Pfam Domains: | 6-51 Myb-like DNA-binding domain 9-67 Myb-like DNA-binding domain 60-102 Myb-like DNA-binding domain 61-109 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MADRVKGPWSQEEDEQLRRMVEKYGPRNWSAISKSIPGRSGKSCRLRWCNQLSPEVEHRP 60 61 FSPEEDETIVTARAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCSGGVAVTTVTETE 120 121 EDQDRPKKRRSVSFDSAFAPVDTGLYMSPESPNGIDVSDSSTIPSPSSPVAQLFKPMPIS 180 181 GGFTVVPQPLPVEMSSSSEDPPTSLSLSLPGAENTSSSHNNNNNALMFPRFESQMKINVE 240 241 ERGEGRRGEFMTVVQEMIKAEVRSYMAEMQKTSGGFVVGGLYESGGNGGFRDCGVITPKV 300 301 E |
| Interface Residues: | 6, 40, 41, 42, 43, 45, 46, 49, 50, 51, 92, 93, 96, 97, 100, 101, 102 |
| 3D-footprint Homologues: | 1vfc_A, 2kdz_A, 7xur_A, 6kks_A, 3osg_A, 7c4r_A, 1mse_C, 3zqc_A, 5eyb_B |
| Binding Motifs: | MA0575.1 madyGACrGTTRs M1330_1.02 GrCrGTTr M0493 ydrwwwwdaCsGTTA M0576 bkTwwdwTACGGTTACGGTT MA0575.2 GACrGTTRs |
| Publications: | Romero I., Fuertes A., Benito M. J., Malpica J., Leyva A., Paz-Ares J. More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana. Plant J. 14:273-284 (1998). [Pubmed] |
| Related annotations: | PaperBLAST |
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