Transcription Factor

Accessions: T125604_1.02 (CISBP 1.02)
Names: 17.m00373, T125604_1.02;
Organisms: Tetrahymena thermophila
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Myb/SANT
Length: 237
Pfam Domains: 88-131 Myb-like DNA-binding domain
90-137 Myb-like DNA-binding domain
Sequence:
(in bold interface residues)
1 MTTKDNKQSCQSSTSDENSIHNQVLLLQQLNNANNSMYSASPRANQLSSVQAGSLAASGC 60
61 DAFQQNASAHSKAAGVNAQSSSAASQHGRWTKEEHQKFLEGLNIYGKNWKKVEEHIGTRT 120
121 GAQIRSHAQKFFNRLEKEFGKTNVTKDLNANSASAQQSQQIQQQKQQNQISSSQANSSLP 180
181 NQIHSLQQNAPTQQLNFASAIQSDYAKHLLKSNTFPNHASKITHILLQPIYIFKFEE
Interface Residues: 79, 121, 122, 125, 126, 129, 130, 133, 134
3D-footprint Homologues: 7xur_A, 3osg_A, 1mse_C, 6j5b_C, 7d3t_D
Binding Motifs: M1393_1.02 wrGATmygs
Related annotations: PaperBLAST

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