Transcription Factor
Accessions: | IRF9 (HT-SELEX2 May2017), IRF9_HUMAN (HOCOMOCO 10), Q00978 (JASPAR 2024) |
Names: | ENSG00000213928, IRF9, IFN-alpha-responsive transcription factor subunit, Interferon regulatory factor 9, Interferon-stimulated gene factor 3 gamma, IRF-9, IRF9_HUMAN, ISGF-3 gamma, ISGF3 p48 subunit, Transcriptional regulator ISGF3 subunit gamma |
Organisms: | Homo sapiens |
Libraries: | HT-SELEX2 May2017 1, HOCOMOCO 10 2, JASPAR 2024 3 1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed] 2 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed] 3 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Notes: | TF family: IRF experiment: HT-SELEX Hamming distance: 1 cycle: 3, TF family: IRF experiment: Methyl-HT-SELEX Hamming distance: 1 cycle: 3 |
Length: | 393 |
Pfam Domains: | 11-116 Interferon regulatory factor transcription factor 218-382 Interferon-regulatory factor 3 |
Sequence: (in bold interface residues) | 1 MASGRARCTRKLRNWVVEQVESGQFPGVCWDDTAKTMFRIPWKHAGKQDFREDQDAAFFK 60 61 AWAIFKGKYKEGDTGGPAVWKTRLRCALNKSSEFKEVPERGRMDVAEPYKVYQLLPPGIV 120 121 SGQPGTQKVPSKRQHSSVSSERKEEEDAMQNCTLSPSVLQDSLNNEEEGASGGAVHSDIG 180 181 SSSSSSSPEPQEVTDTTEAPFQGDQRSLEFLLPPEPDYSLLLTFIYNGRVVGEAQVQSLD 240 241 CRLVAEPSGSESSMEQVLFPKPGPLEPTQRLLSQLERGILVASNPRGLFVQRLCPIPISW 300 301 NAPQAPPGPGPHLLPSNECVELFRTAYFCRDLVRYFQGLGPPPKFQVTLNFWEESHGSSH 360 361 TPQNLITVKMEQAFARYLLEQTPEQQAAILSLV |
Interface Residues: | 44, 46, 78, 82, 83, 85, 86, 89, 90 |
3D-footprint Homologues: | 2pi0_B, 1if1_B, 2irf_L, 7oot_B, 2o61_A |
Binding Motifs: | MA0653.1 AwCGAAACCGAAACy IRF9_2 aCGAAAsyGAAASyr IRF9_methyl_1 ryGAAAsyGAAASyw IRF9_HUMAN.H10MO.C|M01273 GAAAgcGAAAyT |
Publications: | Marquis JF, Kapoustina O, Langlais D, Ruddy R, Dufour CR, Kim BH, MacMicking JD, Giguère V, Gros P. Interferon regulatory factor 8 regulates pathways for antigen presentation in myeloid cells and during tuberculosis. PLoS Genet : (2011). [Pubmed] |
Related annotations: | PaperBLAST |
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