Transcription Factor
| Accessions: | Q9V472 (JASPAR 2024) |
| Names: | DLim1, GH04929p, LIM homeobox 1, isoform A, Q9V472_DROME |
| Organisms: | Drosophila melanogaster |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q9V472 |
| Length: | 505 |
| Pfam Domains: | 27-81 LIM domain 86-142 LIM domain 248-304 Homeobox domain 270-300 Homeobox KN domain |
| Sequence: (in bold interface residues) | 1 MAFGAVLHTSQHNIGRSEPPVGVGDPCAGCNKPILDKFLLNVLERAWHASCVRCCECLQP 60 61 LTDKCFSRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKPRDKVFHLNCFTCCICRKQ 120 121 LSTGEQLYVLDDNKFICKDDYLLGKAPSCGHNSLSDSLMGSASEDDDDDDPPHLRATALG 180 181 LGVLGPNGPDSAGGPLGTSDISVQSMSTDSKNTHDDSDQGSLDGDPDGRGDSQAENKSPD 240 241 DANGSKRRGPRTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRS 300 301 KERRMKQITSMGRPPFFGGARKMRGFPMNLSPGGLDDGPGFPYFAADAKFEFGYGGPFHP 360 361 HDGPYFPGHPGGPMPFNAPGGPMDHSGPIPMVNEFGLTPEATFLGQAGGPPMQLQSAVGP 420 421 PPPPPPPSAEHLMAAAAAAAQQQAAQQQQQQQQQQQQQQQQNAQQAANQTQQQQQQNGPR 480 481 TNSPEFMSSANFSEPQNMQNEGLVW |
| Interface Residues: | 232, 235, 236, 239, 247, 248, 249, 250, 251, 289, 290, 292, 293, 296, 297, 300, 301, 303, 304 |
| 3D-footprint Homologues: | 5zfz_A, 4j19_B, 3a01_E, 6wig_A, 2ld5_A, 2lkx_A, 1puf_A, 5zjt_E, 3cmy_A, 1fjl_B, 6a8r_A, 3d1n_M, 7psx_B, 1ig7_A, 1nk2_P, 1zq3_P, 5jlw_D, 2h1k_B, 1jgg_B, 6m3d_C, 5flv_I, 3lnq_A, 2hdd_A, 1au7_A, 5hod_A, 3rkq_B, 2r5y_A, 1puf_B, 2hos_A, 1b72_A, 4cyc_A, 4xrs_G, 3l1p_A, 7q3o_C, 7xrc_C, 1e3o_C, 1le8_A, 2xsd_C, 1o4x_A, 1du0_A, 4qtr_D, 8g87_X, 4xrm_B, 6es3_K |
| Binding Motifs: | MA0194.1 TTAATTA |
| Binding Sites: | MA0194.1.10 MA0194.1.20 MA0194.1.16 MA0194.1.9 MA0194.1.13 MA0194.1.1 MA0194.1.11 MA0194.1.12 MA0194.1.14 MA0194.1.15 MA0194.1.17 MA0194.1.18 MA0194.1.19 MA0194.1.2 MA0194.1.3 MA0194.1.4 MA0194.1.5 MA0194.1.6 MA0194.1.7 MA0194.1.8 |
| Publications: | Noyes M.B, Meng X, Wakabayashi A, Sinha S, Brodsky M.H, Wolfe S.A. A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system. Nucleic acids research 36:2547-60 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.