Transcription Factor
Accessions: | FOXP2_HUMAN (HOCOMOCO 10), O15409 (JASPAR 2024) |
Names: | CAG repeat protein 44, Forkhead box protein P2, FOXP2_HUMAN, Trinucleotide repeat-containing gene 10 protein |
Organisms: | Homo sapiens |
Libraries: | HOCOMOCO 10 1, JASPAR 2024 2 1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Uniprot: | O15409 |
Length: | 715 |
Pfam Domains: | 504-587 Fork head domain |
Sequence: (in bold interface residues) | 1 MMQESATETISNSSMNQNGMSTLSSQLDAGSRDGRSSGDTSSEVSTVELLHLQQQQALQA 60 61 ARQLLLQQQTSGLKSPKSSDKQRPLQVPVSVAMMTPQVITPQQMQQILQQQVLSPQQLQA 120 121 LLQQQQAVMLQQQQLQEFYKKQQEQLHLQLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 180 181 QQQQQQQQQQQHPGKQAKEQQQQQQQQQQLAAQQLVFQQQLLQMQQLQQQQHLLSLQRQG 240 241 LISIPPGQAALPVQSLPQAGLSPAEIQQLWKEVTGVHSMEDNGIKHGGLDLTTNNSSSTT 300 301 SSNTSKASPPITHHSIVNGQSSVLSARRDSSSHEETGASHTLYGHGVCKWPGCESICEDF 360 361 GQFLKHLNNEHALDDRSTAQCRVQMQVVQQLEIQLSKERERLQAMMTHLHMRPSEPKPSP 420 421 KPLNLVSSVTMSKNMLETSPQSLPQTPTTPTAPVTPITQGPSVITPASVPNVGAIRRRHS 480 481 DKYNIPMSSEIAPNYEFYKNADVRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAY 540 541 FRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEVEYQKRRSQKITGSPTLVKNIPT 600 601 SLGYGAALNASLQAALAESSLPLLSNPGLINNASSGLLQAVHEDLNGSLDHIDSNGNSSP 660 661 GCSPQPHIHSIHVKEEPVIAEDEDCPMSLVTTANHSPELEDDREIEEEPLSEDLE |
Interface Residues: | 495, 497, 544, 547, 549, 550, 551, 553, 554, 555, 557, 558, 567, 569 |
3D-footprint Homologues: | 7yz7_A, 3l2c_A, 7vox_H, 2hdc_A, 7cby_C, 3co6_C, 6ako_C, 2c6y_A, 7yzg_A, 7tdw_A, 3g73_A, 6el8_A, 7tdx_A, 7yzb_A, 6nce_A, 2uzk_A, 7vou_C, 2a07_J, 7yze_A, 3qrf_G |
Binding Motifs: | MA0593.1 awGTAAACAra FOXP2_HUMAN.H10MO.A|M01166 yTGTTTAcw MA0593.2 wGTAAACAr |
Binding Sites: | MA0593.1.1 MA0593.1.10 MA0593.1.11 MA0593.1.12 MA0593.1.13 MA0593.1.14 MA0593.1.15 MA0593.1.16 MA0593.1.17 MA0593.1.18 MA0593.1.19 MA0593.1.2 MA0593.1.20 MA0593.1.3 MA0593.1.4 MA0593.1.5 MA0593.1.6 MA0593.1.7 MA0593.1.8 MA0593.1.9 MA0593.2.1 MA0593.2.10 MA0593.2.11 MA0593.2.12 MA0593.2.13 MA0593.2.14 MA0593.2.15 MA0593.2.16 MA0593.2.17 MA0593.2.18 MA0593.2.19 MA0593.2.2 MA0593.2.20 MA0593.2.3 MA0593.2.4 MA0593.2.5 MA0593.2.6 MA0593.2.7 MA0593.2.8 MA0593.2.9 |
Publications: | Nelson C.S, Fuller C.K, Fordyce P.M, Greninger A.L, Li H, DeRisi J.L. Microfluidic affinity and ChIP-seq analyses converge on a conserved FOXP2-binding motif in chimp and human, which enables the detection of evolutionarily novel targets. Nucleic acids research 41:5991-6004 (2013). [Pubmed] |
Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.